Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp28Q5I043 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp28Q5I043 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC20.59■□□□□ 0.89
Usp28Q5I043 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp28Q5I043 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usp28Q5I043 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC20.59■□□□□ 0.89
Usp28Q5I043 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Usp28Q5I043 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Usp28Q5I043 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp28Q5I043 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp28Q5I043 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp28Q5I043 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC20.58■□□□□ 0.89
Usp28Q5I043 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC20.58■□□□□ 0.89
Usp28Q5I043 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC20.58■□□□□ 0.89
Usp28Q5I043 Gm7514-201ENSMUST00000209475 934 ntBASIC20.58■□□□□ 0.89
Usp28Q5I043 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Usp28Q5I043 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC20.58■□□□□ 0.88
Usp28Q5I043 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp28Q5I043 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Usp28Q5I043 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC20.57■□□□□ 0.88
Usp28Q5I043 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp28Q5I043 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp28Q5I043 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp28Q5I043 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Usp28Q5I043 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC20.57■□□□□ 0.88
Usp28Q5I043 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Usp28Q5I043 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Usp28Q5I043 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp28Q5I043 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp28Q5I043 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp28Q5I043 Dapk1-207ENSMUST00000226059 5009 ntBASIC20.56■□□□□ 0.88
Usp28Q5I043 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Usp28Q5I043 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Usp28Q5I043 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC20.56■□□□□ 0.88
Usp28Q5I043 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC20.56■□□□□ 0.88
Usp28Q5I043 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Usp28Q5I043 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.56■□□□□ 0.88
Usp28Q5I043 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Usp28Q5I043 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC20.56■□□□□ 0.88
Usp28Q5I043 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp28Q5I043 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Usp28Q5I043 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp28Q5I043 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC20.56■□□□□ 0.88
Usp28Q5I043 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usp28Q5I043 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp28Q5I043 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp28Q5I043 Gm37194-201ENSMUST00000193092 3031 ntBASIC20.55■□□□□ 0.88
Usp28Q5I043 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp28Q5I043 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp28Q5I043 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC20.55■□□□□ 0.88
Usp28Q5I043 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp28Q5I043 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usp28Q5I043 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC20.55■□□□□ 0.88
Usp28Q5I043 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp28Q5I043 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usp28Q5I043 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Usp28Q5I043 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp28Q5I043 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp28Q5I043 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp28Q5I043 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp28Q5I043 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp28Q5I043 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.54■□□□□ 0.88
Usp28Q5I043 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC20.54■□□□□ 0.88
Usp28Q5I043 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp28Q5I043 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp28Q5I043 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp28Q5I043 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp28Q5I043 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp28Q5I043 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp28Q5I043 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp28Q5I043 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp28Q5I043 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp28Q5I043 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp28Q5I043 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp28Q5I043 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Usp28Q5I043 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp28Q5I043 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
Usp28Q5I043 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC20.53■□□□□ 0.88
Usp28Q5I043 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp28Q5I043 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp28Q5I043 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp28Q5I043 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp28Q5I043 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp28Q5I043 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Usp28Q5I043 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp28Q5I043 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Usp28Q5I043 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp28Q5I043 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Usp28Q5I043 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Usp28Q5I043 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Usp28Q5I043 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Usp28Q5I043 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Usp28Q5I043 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp28Q5I043 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp28Q5I043 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp28Q5I043 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp28Q5I043 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp28Q5I043 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp28Q5I043 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Usp28Q5I043 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 11.5 ms