Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
Limch1Q3UH68 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC21.33■■□□□ 1
Limch1Q3UH68 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Limch1Q3UH68 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Limch1Q3UH68 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC21.32■■□□□ 1
Limch1Q3UH68 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Limch1Q3UH68 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC21.32■■□□□ 1
Limch1Q3UH68 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Limch1Q3UH68 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Limch1Q3UH68 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC21.32■■□□□ 1
Limch1Q3UH68 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC21.32■■□□□ 1
Limch1Q3UH68 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Limch1Q3UH68 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.32■■□□□ 1
Limch1Q3UH68 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC21.32■■□□□ 1
Limch1Q3UH68 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC21.32■■□□□ 1
Limch1Q3UH68 Gm37856-201ENSMUST00000191634 999 ntBASIC21.32■■□□□ 1
Limch1Q3UH68 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC21.32■■□□□ 1
Limch1Q3UH68 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC21.32■■□□□ 1
Limch1Q3UH68 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Limch1Q3UH68 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Limch1Q3UH68 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Limch1Q3UH68 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC21.32■■□□□ 1
Limch1Q3UH68 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Limch1Q3UH68 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Limch1Q3UH68 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Limch1Q3UH68 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
Limch1Q3UH68 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Limch1Q3UH68 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC21.31■■□□□ 1
Limch1Q3UH68 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC21.31■■□□□ 1
Limch1Q3UH68 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
Limch1Q3UH68 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC21.31■■□□□ 1
Limch1Q3UH68 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC21.31■■□□□ 1
Limch1Q3UH68 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC21.31■■□□□ 1
Limch1Q3UH68 AC160393.1-201ENSMUST00000218378 1279 ntBASIC21.31■■□□□ 1
Limch1Q3UH68 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Limch1Q3UH68 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Limch1Q3UH68 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Limch1Q3UH68 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Limch1Q3UH68 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Limch1Q3UH68 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Limch1Q3UH68 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Limch1Q3UH68 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Limch1Q3UH68 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
Limch1Q3UH68 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC21.3■■□□□ 1
Limch1Q3UH68 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Limch1Q3UH68 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Limch1Q3UH68 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC21.3■■□□□ 1
Limch1Q3UH68 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Limch1Q3UH68 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
Limch1Q3UH68 AC121961.1-201ENSMUST00000218594 1779 ntBASIC21.3■■□□□ 1
Limch1Q3UH68 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Limch1Q3UH68 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Limch1Q3UH68 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Limch1Q3UH68 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Limch1Q3UH68 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
Limch1Q3UH68 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Limch1Q3UH68 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Limch1Q3UH68 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC21.29■■□□□ 1
Limch1Q3UH68 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Limch1Q3UH68 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC21.29■■□□□ 1
Limch1Q3UH68 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC21.29■■□□□ 1
Limch1Q3UH68 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Limch1Q3UH68 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
Limch1Q3UH68 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Limch1Q3UH68 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC21.28■■□□□ 1
Limch1Q3UH68 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
Limch1Q3UH68 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC21.28■■□□□ 1
Limch1Q3UH68 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Limch1Q3UH68 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Limch1Q3UH68 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Limch1Q3UH68 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Limch1Q3UH68 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Limch1Q3UH68 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Limch1Q3UH68 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Limch1Q3UH68 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Limch1Q3UH68 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC21.27■■□□□ 1
Limch1Q3UH68 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC21.27■■□□□ 1
Limch1Q3UH68 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC21.27■■□□□ 1
Limch1Q3UH68 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
Limch1Q3UH68 Gm26524-201ENSMUST00000192339 390 ntBASIC21.27■■□□□ 1
Limch1Q3UH68 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Limch1Q3UH68 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Limch1Q3UH68 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Limch1Q3UH68 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Limch1Q3UH68 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC21.27■■□□□ 1
Limch1Q3UH68 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Limch1Q3UH68 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC21.27■□□□□ 0.99
Limch1Q3UH68 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Limch1Q3UH68 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Limch1Q3UH68 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC21.26■□□□□ 0.99
Limch1Q3UH68 Gm43182-201ENSMUST00000199476 2528 ntBASIC21.26■□□□□ 0.99
Limch1Q3UH68 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC21.26■□□□□ 0.99
Limch1Q3UH68 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Limch1Q3UH68 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Limch1Q3UH68 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Limch1Q3UH68 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Limch1Q3UH68 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC21.26■□□□□ 0.99
Limch1Q3UH68 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Limch1Q3UH68 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Limch1Q3UH68 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms