Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm1P58771 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm1P58771 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm1P58771 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm1P58771 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC20.24■□□□□ 0.83
Tpm1P58771 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm1P58771 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm1P58771 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Tpm1P58771 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.23■□□□□ 0.83
Tpm1P58771 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Tpm1P58771 Gm12251-201ENSMUST00000117893 792 ntBASIC20.23■□□□□ 0.83
Tpm1P58771 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.23■□□□□ 0.83
Tpm1P58771 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 Flvcr1-202ENSMUST00000191946 1216 ntBASIC20.23■□□□□ 0.83
Tpm1P58771 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 Gm6598-201ENSMUST00000202719 2615 ntBASIC20.23■□□□□ 0.83
Tpm1P58771 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.23■□□□□ 0.83
Tpm1P58771 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm1P58771 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm1P58771 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Tpm1P58771 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm1P58771 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm1P58771 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm1P58771 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm1P58771 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm1P58771 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm1P58771 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm1P58771 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC20.22■□□□□ 0.83
Tpm1P58771 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm1P58771 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Tpm1P58771 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm1P58771 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Tpm1P58771 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Tpm1P58771 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Tpm1P58771 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC20.21■□□□□ 0.83
Tpm1P58771 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Tpm1P58771 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm1P58771 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Tpm1P58771 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Tpm1P58771 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm1P58771 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm1P58771 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm1P58771 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.21■□□□□ 0.83
Tpm1P58771 Smad6-203ENSMUST00000179458 273 ntBASIC20.21■□□□□ 0.83
Tpm1P58771 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm1P58771 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm1P58771 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Tpm1P58771 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm1P58771 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm1P58771 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm1P58771 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm1P58771 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC20.2■□□□□ 0.82
Tpm1P58771 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm1P58771 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
Tpm1P58771 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm1P58771 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm1P58771 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm1P58771 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm1P58771 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm1P58771 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm1P58771 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm1P58771 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm1P58771 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Tpm1P58771 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm1P58771 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm1P58771 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC20.2■□□□□ 0.82
Tpm1P58771 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 Gm15635-204ENSMUST00000208024 2539 ntBASIC20.19■□□□□ 0.82
Tpm1P58771 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.19■□□□□ 0.82
Tpm1P58771 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Tpm1P58771 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm1P58771 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Tpm1P58771 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms