Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cdh11P55288 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Cdh11P55288 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC16.51■□□□□ 0.23
Cdh11P55288 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdh11P55288 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdh11P55288 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdh11P55288 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cdh11P55288 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cdh11P55288 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cdh11P55288 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Cdh11P55288 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cdh11P55288 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdh11P55288 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cdh11P55288 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdh11P55288 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC16.5■□□□□ 0.23
Cdh11P55288 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdh11P55288 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC16.5■□□□□ 0.23
Cdh11P55288 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdh11P55288 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdh11P55288 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Cdh11P55288 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC16.5■□□□□ 0.23
Cdh11P55288 Gm7514-201ENSMUST00000209475 934 ntBASIC16.5■□□□□ 0.23
Cdh11P55288 Ap3s1-204ENSMUST00000225520 957 ntBASIC16.5■□□□□ 0.23
Cdh11P55288 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdh11P55288 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdh11P55288 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdh11P55288 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdh11P55288 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 Shroom3-211ENSMUST00000225438 5742 ntBASIC16.49■□□□□ 0.23
Cdh11P55288 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Cdh11P55288 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC16.49■□□□□ 0.23
Cdh11P55288 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Cdh11P55288 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC16.49■□□□□ 0.23
Cdh11P55288 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC16.49■□□□□ 0.23
Cdh11P55288 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC16.49■□□□□ 0.23
Cdh11P55288 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdh11P55288 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdh11P55288 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cdh11P55288 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cdh11P55288 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Cdh11P55288 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdh11P55288 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC16.48■□□□□ 0.23
Cdh11P55288 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdh11P55288 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdh11P55288 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Cdh11P55288 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cdh11P55288 CT030146.1-201ENSMUST00000220919 217 ntBASIC16.48■□□□□ 0.23
Cdh11P55288 Spcs1-207ENSMUST00000228767 1008 ntBASIC16.48■□□□□ 0.23
Cdh11P55288 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdh11P55288 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdh11P55288 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdh11P55288 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdh11P55288 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cdh11P55288 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Cdh11P55288 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdh11P55288 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdh11P55288 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC16.48■□□□□ 0.23
Cdh11P55288 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Cdh11P55288 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC16.47■□□□□ 0.23
Cdh11P55288 Gm10602-201ENSMUST00000098239 609 ntBASIC16.47■□□□□ 0.23
Cdh11P55288 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC16.47■□□□□ 0.23
Cdh11P55288 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
Cdh11P55288 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdh11P55288 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdh11P55288 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC16.46■□□□□ 0.23
Cdh11P55288 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdh11P55288 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cdh11P55288 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Cdh11P55288 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cdh11P55288 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdh11P55288 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdh11P55288 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
Cdh11P55288 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms