Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC21.35■■□□□ 1.01
Col1a1P11087 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Col1a1P11087 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col1a1P11087 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col1a1P11087 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Col1a1P11087 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Col1a1P11087 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col1a1P11087 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Col1a1P11087 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC21.34■■□□□ 1.01
Col1a1P11087 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC21.34■■□□□ 1.01
Col1a1P11087 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC21.34■■□□□ 1.01
Col1a1P11087 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col1a1P11087 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col1a1P11087 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col1a1P11087 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC21.34■■□□□ 1.01
Col1a1P11087 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Col1a1P11087 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col1a1P11087 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Col1a1P11087 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Col1a1P11087 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC21.33■■□□□ 1.01
Col1a1P11087 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC21.33■■□□□ 1.01
Col1a1P11087 AC159205.3-201ENSMUST00000224614 874 ntBASIC21.33■■□□□ 1.01
Col1a1P11087 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col1a1P11087 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Col1a1P11087 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
Col1a1P11087 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC21.33■■□□□ 1
Col1a1P11087 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Col1a1P11087 Gm14464-201ENSMUST00000119658 1254 ntBASIC21.32■■□□□ 1
Col1a1P11087 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC21.32■■□□□ 1
Col1a1P11087 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Col1a1P11087 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Col1a1P11087 AC154471.1-201ENSMUST00000224418 436 ntBASIC21.32■■□□□ 1
Col1a1P11087 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col1a1P11087 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Col1a1P11087 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Col1a1P11087 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
Col1a1P11087 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col1a1P11087 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col1a1P11087 Gm16061-201ENSMUST00000122167 857 ntBASIC21.32■■□□□ 1
Col1a1P11087 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col1a1P11087 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col1a1P11087 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Col1a1P11087 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col1a1P11087 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Col1a1P11087 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col1a1P11087 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC21.31■■□□□ 1
Col1a1P11087 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Col1a1P11087 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Col1a1P11087 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col1a1P11087 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Col1a1P11087 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col1a1P11087 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col1a1P11087 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Col1a1P11087 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col1a1P11087 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col1a1P11087 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col1a1P11087 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col1a1P11087 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col1a1P11087 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col1a1P11087 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col1a1P11087 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col1a1P11087 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Col1a1P11087 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Col1a1P11087 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col1a1P11087 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC21.29■■□□□ 1
Col1a1P11087 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col1a1P11087 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col1a1P11087 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Col1a1P11087 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Col1a1P11087 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC21.28■■□□□ 1
Col1a1P11087 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col1a1P11087 Gm7284-201ENSMUST00000131667 944 ntBASIC21.28■■□□□ 1
Col1a1P11087 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col1a1P11087 Gm25016-201ENSMUST00000158399 131 ntBASIC21.28■■□□□ 1
Col1a1P11087 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC21.28■■□□□ 1
Col1a1P11087 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col1a1P11087 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC21.28■■□□□ 1
Col1a1P11087 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col1a1P11087 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col1a1P11087 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col1a1P11087 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col1a1P11087 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Col1a1P11087 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col1a1P11087 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.28■■□□□ 1
Col1a1P11087 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Col1a1P11087 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC21.27■■□□□ 1
Col1a1P11087 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col1a1P11087 Gm4974-201ENSMUST00000209974 875 ntBASIC21.27■■□□□ 1
Col1a1P11087 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col1a1P11087 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col1a1P11087 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Col1a1P11087 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Col1a1P11087 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC21.26■□□□□ 0.99
Col1a1P11087 Gm17971-201ENSMUST00000190239 806 ntBASIC21.26■□□□□ 0.99
Col1a1P11087 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col1a1P11087 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
Col1a1P11087 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col1a1P11087 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
Col1a1P11087 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Col1a1P11087 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms