Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.77■■□□□ 1.08
Col3a1P08121 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col3a1P08121 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col3a1P08121 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col3a1P08121 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col3a1P08121 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.07
Col3a1P08121 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
Col3a1P08121 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
Col3a1P08121 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Col3a1P08121 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC21.77■■□□□ 1.07
Col3a1P08121 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col3a1P08121 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col3a1P08121 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC21.76■■□□□ 1.07
Col3a1P08121 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col3a1P08121 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col3a1P08121 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col3a1P08121 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC21.76■■□□□ 1.07
Col3a1P08121 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col3a1P08121 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col3a1P08121 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col3a1P08121 Tgds-204ENSMUST00000228543 1594 ntBASIC21.76■■□□□ 1.07
Col3a1P08121 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Col3a1P08121 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Col3a1P08121 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col3a1P08121 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col3a1P08121 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col3a1P08121 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col3a1P08121 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Col3a1P08121 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC21.75■■□□□ 1.07
Col3a1P08121 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Col3a1P08121 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col3a1P08121 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col3a1P08121 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col3a1P08121 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col3a1P08121 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Col3a1P08121 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col3a1P08121 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col3a1P08121 AC108858.1-201ENSMUST00000228461 1498 ntBASIC21.74■■□□□ 1.07
Col3a1P08121 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Col3a1P08121 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col3a1P08121 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC21.74■■□□□ 1.07
Col3a1P08121 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC21.74■■□□□ 1.07
Col3a1P08121 Gm10231-201ENSMUST00000181584 441 ntBASIC21.74■■□□□ 1.07
Col3a1P08121 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col3a1P08121 Gm10175-202ENSMUST00000208752 441 ntBASIC21.74■■□□□ 1.07
Col3a1P08121 Gm30025-201ENSMUST00000218555 728 ntBASIC21.74■■□□□ 1.07
Col3a1P08121 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col3a1P08121 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col3a1P08121 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col3a1P08121 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col3a1P08121 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col3a1P08121 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col3a1P08121 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col3a1P08121 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col3a1P08121 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Col3a1P08121 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col3a1P08121 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Col3a1P08121 Gm13559-201ENSMUST00000120476 863 ntBASIC21.73■■□□□ 1.07
Col3a1P08121 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC21.73■■□□□ 1.07
Col3a1P08121 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC21.73■■□□□ 1.07
Col3a1P08121 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Col3a1P08121 AC121577.1-201ENSMUST00000227302 707 ntBASIC21.73■■□□□ 1.07
Col3a1P08121 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Col3a1P08121 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col3a1P08121 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col3a1P08121 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col3a1P08121 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col3a1P08121 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Col3a1P08121 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC21.72■■□□□ 1.07
Col3a1P08121 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col3a1P08121 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col3a1P08121 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
Col3a1P08121 Gm9987-201ENSMUST00000069768 567 ntBASIC21.72■■□□□ 1.07
Col3a1P08121 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col3a1P08121 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Col3a1P08121 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col3a1P08121 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col3a1P08121 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC21.71■■□□□ 1.07
Col3a1P08121 Gm11539-201ENSMUST00000119837 557 ntBASIC21.71■■□□□ 1.07
Col3a1P08121 Gm13436-201ENSMUST00000120418 567 ntBASIC21.71■■□□□ 1.07
Col3a1P08121 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC21.71■■□□□ 1.07
Col3a1P08121 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Col3a1P08121 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col3a1P08121 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col3a1P08121 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col3a1P08121 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col3a1P08121 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col3a1P08121 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC21.71■■□□□ 1.07
Col3a1P08121 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col3a1P08121 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.71■■□□□ 1.07
Col3a1P08121 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC21.71■■□□□ 1.07
Col3a1P08121 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col3a1P08121 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col3a1P08121 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col3a1P08121 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Col3a1P08121 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Col3a1P08121 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col3a1P08121 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col3a1P08121 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col3a1P08121 Gm42922-201ENSMUST00000195887 2078 ntBASIC21.7■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms