Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdha4O88689 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdha4O88689 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdha4O88689 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdha4O88689 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdha4O88689 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdha4O88689 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdha4O88689 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdha4O88689 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC20.28■□□□□ 0.84
Pcdha4O88689 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Pcdha4O88689 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Pcdha4O88689 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Pcdha4O88689 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC20.27■□□□□ 0.84
Pcdha4O88689 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
Pcdha4O88689 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdha4O88689 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
Pcdha4O88689 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdha4O88689 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Pcdha4O88689 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdha4O88689 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdha4O88689 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdha4O88689 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdha4O88689 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdha4O88689 Tgds-204ENSMUST00000228543 1594 ntBASIC20.27■□□□□ 0.84
Pcdha4O88689 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdha4O88689 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdha4O88689 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdha4O88689 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdha4O88689 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Pcdha4O88689 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC20.26■□□□□ 0.83
Pcdha4O88689 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Pcdha4O88689 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC20.26■□□□□ 0.83
Pcdha4O88689 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
Pcdha4O88689 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC20.26■□□□□ 0.83
Pcdha4O88689 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Pcdha4O88689 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Pcdha4O88689 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Pcdha4O88689 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Pcdha4O88689 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdha4O88689 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC20.25■□□□□ 0.83
Pcdha4O88689 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdha4O88689 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC20.25■□□□□ 0.83
Pcdha4O88689 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC20.25■□□□□ 0.83
Pcdha4O88689 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdha4O88689 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdha4O88689 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdha4O88689 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdha4O88689 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdha4O88689 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Pcdha4O88689 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdha4O88689 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.24■□□□□ 0.83
Pcdha4O88689 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC20.24■□□□□ 0.83
Pcdha4O88689 AC163280.1-201ENSMUST00000228194 1100 ntBASIC20.24■□□□□ 0.83
Pcdha4O88689 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Pcdha4O88689 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha4O88689 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC20.23■□□□□ 0.83
Pcdha4O88689 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
Pcdha4O88689 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC20.23■□□□□ 0.83
Pcdha4O88689 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha4O88689 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Pcdha4O88689 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha4O88689 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha4O88689 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha4O88689 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha4O88689 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha4O88689 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha4O88689 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha4O88689 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha4O88689 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha4O88689 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha4O88689 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Pcdha4O88689 Gm13158-201ENSMUST00000122007 736 ntBASIC20.22■□□□□ 0.83
Pcdha4O88689 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha4O88689 AC112142.1-201ENSMUST00000228796 918 ntBASIC20.22■□□□□ 0.83
Pcdha4O88689 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha4O88689 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha4O88689 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha4O88689 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha4O88689 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC20.22■□□□□ 0.83
Pcdha4O88689 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Pcdha4O88689 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha4O88689 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha4O88689 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha4O88689 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha4O88689 Gm35558-201ENSMUST00000222675 2219 ntBASIC20.21■□□□□ 0.83
Pcdha4O88689 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Pcdha4O88689 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC20.21■□□□□ 0.83
Pcdha4O88689 Mtag2-201ENSMUST00000058665 714 ntBASIC20.21■□□□□ 0.83
Pcdha4O88689 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha4O88689 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha4O88689 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha4O88689 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha4O88689 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha4O88689 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha4O88689 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha4O88689 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.83
Pcdha4O88689 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha4O88689 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha4O88689 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha4O88689 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms