Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clk3O35492 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clk3O35492 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clk3O35492 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Clk3O35492 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clk3O35492 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
Clk3O35492 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC17.24■□□□□ 0.35
Clk3O35492 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
Clk3O35492 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clk3O35492 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Clk3O35492 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Clk3O35492 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk3O35492 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk3O35492 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Clk3O35492 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk3O35492 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk3O35492 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk3O35492 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Clk3O35492 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.23■□□□□ 0.35
Clk3O35492 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC17.23■□□□□ 0.35
Clk3O35492 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk3O35492 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk3O35492 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk3O35492 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Clk3O35492 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Clk3O35492 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
Clk3O35492 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.22■□□□□ 0.35
Clk3O35492 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk3O35492 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Clk3O35492 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk3O35492 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Clk3O35492 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.22■□□□□ 0.35
Clk3O35492 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Clk3O35492 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Clk3O35492 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Clk3O35492 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Clk3O35492 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Clk3O35492 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Clk3O35492 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Clk3O35492 Gm13146-201ENSMUST00000118508 780 ntBASIC17.21■□□□□ 0.35
Clk3O35492 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Clk3O35492 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Clk3O35492 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC17.21■□□□□ 0.35
Clk3O35492 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC17.21■□□□□ 0.35
Clk3O35492 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Clk3O35492 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
Clk3O35492 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC17.21■□□□□ 0.35
Clk3O35492 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
Clk3O35492 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Clk3O35492 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk3O35492 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk3O35492 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk3O35492 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk3O35492 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Clk3O35492 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk3O35492 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk3O35492 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC17.2■□□□□ 0.34
Clk3O35492 CT010467.1-202ENSMUST00000205406 714 ntBASIC17.2■□□□□ 0.34
Clk3O35492 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Clk3O35492 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk3O35492 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Clk3O35492 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk3O35492 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk3O35492 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC17.2■□□□□ 0.34
Clk3O35492 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Clk3O35492 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clk3O35492 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Clk3O35492 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clk3O35492 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clk3O35492 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clk3O35492 Gm42569-201ENSMUST00000200539 472 ntBASIC17.19■□□□□ 0.34
Clk3O35492 AV356131-201ENSMUST00000206201 750 ntBASIC17.19■□□□□ 0.34
Clk3O35492 Gm10033-202ENSMUST00000211874 928 ntBASIC17.19■□□□□ 0.34
Clk3O35492 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clk3O35492 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clk3O35492 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clk3O35492 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Clk3O35492 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC17.19■□□□□ 0.34
Clk3O35492 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clk3O35492 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
Clk3O35492 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk3O35492 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk3O35492 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Clk3O35492 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk3O35492 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk3O35492 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Clk3O35492 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Clk3O35492 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.18■□□□□ 0.34
Clk3O35492 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Clk3O35492 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk3O35492 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Clk3O35492 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Clk3O35492 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Clk3O35492 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.18■□□□□ 0.34
Clk3O35492 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Clk3O35492 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk3O35492 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk3O35492 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Clk3O35492 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC17.17■□□□□ 0.34
Clk3O35492 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms