Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Tbata-207ENSMUST00000140456 953 ntTSL 5 BASIC9.78□□□□□ -0.84
Cux1P53564 Tbata-208ENSMUST00000143207 982 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Cux1P53564 Gm27167-201ENSMUST00000183752 511 ntTSL 3 BASIC9.78□□□□□ -0.84
Cux1P53564 1700016L21Rik-201ENSMUST00000187497 394 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Cux1P53564 Gm28502-201ENSMUST00000189781 476 ntTSL 2 BASIC9.78□□□□□ -0.84
Cux1P53564 Gm43222-201ENSMUST00000199013 603 ntBASIC9.78□□□□□ -0.84
Cux1P53564 Epgn-202ENSMUST00000202724 805 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
Cux1P53564 AC160413.1-201ENSMUST00000217909 932 ntTSL 5 BASIC9.78□□□□□ -0.84
Cux1P53564 AC167222.2-201ENSMUST00000220014 295 ntBASIC9.78□□□□□ -0.84
Cux1P53564 Olfr447-201ENSMUST00000055763 933 ntAPPRIS P1 BASIC9.78□□□□□ -0.84
Cux1P53564 Olfr263-201ENSMUST00000096006 1087 ntAPPRIS P1 BASIC9.78□□□□□ -0.84
Cux1P53564 Plxna2-201ENSMUST00000027952 11040 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Cux1P53564 Gm11242-201ENSMUST00000120103 2457 ntBASIC9.78□□□□□ -0.84
Cux1P53564 Gm26807-201ENSMUST00000181132 4363 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Cux1P53564 Zfp488-201ENSMUST00000166737 4301 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Cux1P53564 4732465J04Rik-202ENSMUST00000187483 2744 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Cux1P53564 Bdnf-204ENSMUST00000111044 3854 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Cux1P53564 Klhl23-201ENSMUST00000053087 4617 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Cux1P53564 Ptprj-201ENSMUST00000111493 7124 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
Cux1P53564 AC159264.1-201ENSMUST00000224844 4257 ntBASIC9.78□□□□□ -0.84
Cux1P53564 Nmrk1-201ENSMUST00000042392 1357 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Cux1P53564 Prickle2-203ENSMUST00000113446 7860 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Cux1P53564 Gm38085-201ENSMUST00000195785 3062 ntBASIC9.78□□□□□ -0.84
Cux1P53564 Igkv4-78-201ENSMUST00000103343 358 ntAPPRIS P1 BASIC9.77□□□□□ -0.84
Cux1P53564 Gm13566-201ENSMUST00000117428 1142 ntBASIC9.77□□□□□ -0.84
Cux1P53564 Gm25906-201ENSMUST00000158489 126 ntBASIC9.77□□□□□ -0.84
Cux1P53564 Gm37477-201ENSMUST00000195215 884 ntBASIC9.77□□□□□ -0.84
Cux1P53564 Gm43269-201ENSMUST00000202075 518 ntTSL 3 BASIC9.77□□□□□ -0.84
Cux1P53564 Gm43105-201ENSMUST00000202987 459 ntBASIC9.77□□□□□ -0.84
Cux1P53564 1810024B03Rik-201ENSMUST00000056146 1266 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.84
Cux1P53564 Gm26163-201ENSMUST00000083792 178 ntBASIC9.77□□□□□ -0.84
Cux1P53564 Fam227b-204ENSMUST00000178118 1599 ntAPPRIS P2 TSL 5 BASIC9.77□□□□□ -0.84
Cux1P53564 Gm37570-201ENSMUST00000195411 3106 ntBASIC9.77□□□□□ -0.84
Cux1P53564 Tmem207-201ENSMUST00000165687 1538 ntAPPRIS P1 TSL 2 BASIC9.77□□□□□ -0.85
Cux1P53564 Fbln5-203ENSMUST00000222587 2371 ntTSL 5 BASIC9.77□□□□□ -0.85
Cux1P53564 Fam90a1b-203ENSMUST00000113903 1760 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cux1P53564 4930532G15Rik-202ENSMUST00000195314 1457 ntBASIC9.77□□□□□ -0.85
Cux1P53564 Mettl6-201ENSMUST00000055303 3946 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cux1P53564 Gdpd4-201ENSMUST00000041860 3053 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cux1P53564 Zscan18-201ENSMUST00000046245 3626 ntAPPRIS P1 TSL 5 BASIC9.77□□□□□ -0.85
Cux1P53564 Inpp5d-208ENSMUST00000167032 4125 ntTSL 2 BASIC9.77□□□□□ -0.85
Cux1P53564 Pramef8-201ENSMUST00000037356 3260 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cux1P53564 Gm43398-201ENSMUST00000196584 2742 ntBASIC9.77□□□□□ -0.85
Cux1P53564 Gm26606-201ENSMUST00000181292 2439 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Cux1P53564 Hook3-201ENSMUST00000037182 12836 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cux1P53564 Cyp4a10-201ENSMUST00000058785 2109 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cux1P53564 Ggta1-203ENSMUST00000102794 3606 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cux1P53564 Gm44022-201ENSMUST00000203708 5429 ntBASIC9.77□□□□□ -0.85
Cux1P53564 Macrod2os2-201ENSMUST00000143227 3566 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Cux1P53564 Mir708-201ENSMUST00000102189 109 ntBASIC9.77□□□□□ -0.85
Cux1P53564 Mup3-202ENSMUST00000107472 916 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cux1P53564 Eaf2-203ENSMUST00000114825 668 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Cux1P53564 Gm20770-201ENSMUST00000193474 694 ntBASIC9.77□□□□□ -0.85
Cux1P53564 Gm29678-201ENSMUST00000193966 1134 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Cux1P53564 Gm34350-201ENSMUST00000208898 481 ntTSL 5 BASIC9.77□□□□□ -0.85
Cux1P53564 AC154816.1-201ENSMUST00000222688 634 ntTSL 3 BASIC9.77□□□□□ -0.85
Cux1P53564 AC116319.2-201ENSMUST00000228159 984 ntBASIC9.77□□□□□ -0.85
Cux1P53564 Gm5830-201ENSMUST00000049117 443 ntBASIC9.77□□□□□ -0.85
Cux1P53564 Ttk-202ENSMUST00000185913 2731 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Cux1P53564 Slc8a1-203ENSMUST00000163680 2913 ntAPPRIS ALT1 TSL 5 BASIC9.76□□□□□ -0.85
Cux1P53564 Slc8a1-201ENSMUST00000086538 2913 ntAPPRIS P2 TSL 5 BASIC9.76□□□□□ -0.85
Cux1P53564 Gm43549-201ENSMUST00000198856 2661 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Cux1P53564 Akap2-204ENSMUST00000102902 6993 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Cux1P53564 A930030B08Rik-201ENSMUST00000207625 3965 ntBASIC9.76□□□□□ -0.85
Cux1P53564 Plb1-201ENSMUST00000101376 4699 ntAPPRIS P1 TSL 5 BASIC9.76□□□□□ -0.85
Cux1P53564 BC046251-201ENSMUST00000154632 3653 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Cux1P53564 D630045J12Rik-201ENSMUST00000117556 10916 ntAPPRIS ALT2 TSL 5 BASIC9.76□□□□□ -0.85
Cux1P53564 Slc22a6-201ENSMUST00000010250 4026 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cux1P53564 4930432O09Rik-201ENSMUST00000219710 1986 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Cux1P53564 Gm36283-203ENSMUST00000220211 3732 ntTSL 5 BASIC9.76□□□□□ -0.85
Cux1P53564 Gm44231-201ENSMUST00000204106 4075 ntBASIC9.76□□□□□ -0.85
Cux1P53564 Sptlc3-201ENSMUST00000047370 2759 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cux1P53564 Ighv1-20-201ENSMUST00000103506 348 ntAPPRIS ALT2 BASIC9.76□□□□□ -0.85
Cux1P53564 Gm12874-201ENSMUST00000117190 913 ntBASIC9.76□□□□□ -0.85
Cux1P53564 Gm14783-201ENSMUST00000118900 663 ntBASIC9.76□□□□□ -0.85
Cux1P53564 B230112J18Rik-201ENSMUST00000128473 602 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Cux1P53564 4930549C15Rik-201ENSMUST00000221235 1260 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Cux1P53564 Gm10095-201ENSMUST00000222765 483 ntBASIC9.76□□□□□ -0.85
Cux1P53564 Prl8a8-204ENSMUST00000224072 1128 ntAPPRIS ALT2 BASIC9.76□□□□□ -0.85
Cux1P53564 Fcer1a-201ENSMUST00000049706 998 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cux1P53564 Olfr410-201ENSMUST00000052254 948 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
Cux1P53564 Dock9-201ENSMUST00000040700 7803 ntAPPRIS P3 TSL 2 BASIC9.76□□□□□ -0.85
Cux1P53564 Gm16170-201ENSMUST00000156882 3754 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Cux1P53564 Morc2a-202ENSMUST00000096441 4594 ntAPPRIS P1 TSL 5 BASIC9.76□□□□□ -0.85
Cux1P53564 Prkg1-201ENSMUST00000065067 3914 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cux1P53564 Ncoa7-209ENSMUST00000216172 2026 ntAPPRIS ALT1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Cux1P53564 Gm20043-201ENSMUST00000222267 2565 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
Cux1P53564 Gm29364-201ENSMUST00000185289 2167 ntTSL 5 BASIC9.75□□□□□ -0.85
Cux1P53564 Xlr3b-201ENSMUST00000101486 1564 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Cux1P53564 Mei1-204ENSMUST00000189540 3718 ntAPPRIS P2 TSL 1 (best) BASIC9.75□□□□□ -0.85
Cux1P53564 Psd3-203ENSMUST00000093468 1739 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
Cux1P53564 Epg5-201ENSMUST00000044622 9672 ntAPPRIS P1 TSL 5 BASIC9.75□□□□□ -0.85
Cux1P53564 Odf2l-203ENSMUST00000098539 2261 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Cux1P53564 Pax5-201ENSMUST00000014174 8004 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Cux1P53564 Mgat4a-205ENSMUST00000151952 7251 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Cux1P53564 Gmeb1-207ENSMUST00000168553 6523 ntAPPRIS P1 TSL 5 BASIC9.75□□□□□ -0.85
Cux1P53564 Pgbd1-202ENSMUST00000122872 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.85
Cux1P53564 Slc17a1-201ENSMUST00000006785 2026 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Cux1P53564 Gm15233-201ENSMUST00000118747 400 ntBASIC9.75□□□□□ -0.85
Cux1P53564 Sox5os3-202ENSMUST00000154167 765 ntTSL 3 BASIC9.75□□□□□ -0.85
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms