Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Trp53bp1-201ENSMUST00000110647 9405 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 CT030181.1-201ENSMUST00000089534 3549 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Igkv6-20-201ENSMUST00000103388 375 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Gm12939-201ENSMUST00000117303 165 ntBASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Gm13566-201ENSMUST00000117428 1142 ntBASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Gm11370-201ENSMUST00000120583 260 ntBASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Gm7494-201ENSMUST00000121248 441 ntBASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Gm23884-201ENSMUST00000122687 294 ntBASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Gm15935-202ENSMUST00000141656 298 ntTSL 2 BASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Gm24682-201ENSMUST00000158764 137 ntBASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Gm22094-201ENSMUST00000158976 117 ntBASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Olr1-203ENSMUST00000182784 570 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Mir3473e-201ENSMUST00000183932 110 ntBASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Txndc9-203ENSMUST00000192960 472 ntTSL 3 BASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Gm43849-201ENSMUST00000201086 215 ntBASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Gm17834-201ENSMUST00000204322 891 ntBASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Gm39078-201ENSMUST00000207973 704 ntTSL 5 BASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 AC163621.1-201ENSMUST00000220695 379 ntBASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 CT030238.4-202ENSMUST00000226143 745 ntBASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Ninj2-201ENSMUST00000035244 823 ntAPPRIS ALT2 TSL 2 BASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Aph1c-201ENSMUST00000057261 715 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Fpr2-201ENSMUST00000064068 1133 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Gm23238-201ENSMUST00000083007 164 ntBASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Gm10205-201ENSMUST00000087431 234 ntBASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Zranb3-203ENSMUST00000112538 4741 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 Wdr66-206ENSMUST00000163092 4009 ntTSL 5 BASIC6.9□□□□□ -1.3
Upf3bQ3ULL6 AF366264-201ENSMUST00000071308 3157 ntAPPRIS P1 BASIC6.9□□□□□ -1.31
Upf3bQ3ULL6 Zfp619-201ENSMUST00000108015 5969 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
Upf3bQ3ULL6 Hivep3-202ENSMUST00000106307 11838 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
Upf3bQ3ULL6 Sphkap-205ENSMUST00000160953 8154 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
Upf3bQ3ULL6 Gm1965-202ENSMUST00000161362 2405 ntTSL 2 BASIC6.9□□□□□ -1.31
Upf3bQ3ULL6 4922502D21Rik-201ENSMUST00000051283 1582 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
Upf3bQ3ULL6 Tmprss15-202ENSMUST00000060402 3681 ntAPPRIS ALT2 TSL 2 BASIC6.9□□□□□ -1.31
Upf3bQ3ULL6 Cnot2-203ENSMUST00000105267 2800 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
Upf3bQ3ULL6 Gm17529-201ENSMUST00000180738 3093 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
Upf3bQ3ULL6 Rpp40-201ENSMUST00000171686 4380 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
Upf3bQ3ULL6 Prep-201ENSMUST00000099858 10933 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Olfr401-202ENSMUST00000213754 2227 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Ftx-205ENSMUST00000156211 4215 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Gm38124-201ENSMUST00000191710 2581 ntBASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 A930017M01Rik-201ENSMUST00000081361 2884 ntBASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Gm8700-201ENSMUST00000222187 3054 ntBASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Ap2b1-202ENSMUST00000065692 3269 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Cd200r3-205ENSMUST00000114613 950 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Rpl12-ps1-201ENSMUST00000116168 498 ntBASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Gm13768-201ENSMUST00000116469 929 ntBASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Rpl5-ps2-201ENSMUST00000119057 891 ntBASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Gm11445-201ENSMUST00000119101 532 ntBASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Gm10658-201ENSMUST00000128125 1241 ntTSL 2 BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 2210411M09Rik-201ENSMUST00000128545 643 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Gm15551-201ENSMUST00000132762 535 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Gm26037-201ENSMUST00000158150 311 ntBASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Cldn34a-201ENSMUST00000164764 636 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Csn3-201ENSMUST00000001667 991 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Gm26901-201ENSMUST00000181554 1193 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Gm26974-201ENSMUST00000182054 875 ntTSL 2 BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Scgb1b17-201ENSMUST00000187081 417 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Scgb1b10-201ENSMUST00000187257 417 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Ly6c2-203ENSMUST00000188214 638 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Scgb1b15-201ENSMUST00000189118 417 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Gm45514-201ENSMUST00000211531 689 ntBASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Gm45823-201ENSMUST00000212714 515 ntTSL 5 BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 AC154861.1-201ENSMUST00000223767 800 ntBASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 CT009527.2-201ENSMUST00000225386 606 ntBASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Ogdh-202ENSMUST00000081894 4114 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Ppp1r3b-201ENSMUST00000070481 4221 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 AC098728.1-202ENSMUST00000226656 2198 ntBASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Sytl5-201ENSMUST00000067529 2301 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Wdr76-201ENSMUST00000028676 2789 ntAPPRIS P2 TSL 1 (best) BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Gm5431-203ENSMUST00000109212 3063 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Spag17os-202ENSMUST00000145279 3219 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Atm-201ENSMUST00000118282 10006 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
Upf3bQ3ULL6 Rc3h2-201ENSMUST00000100143 8799 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Vmn1r193-204ENSMUST00000228303 6653 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Cyld-206ENSMUST00000209559 4476 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Gm26742-201ENSMUST00000181829 3340 ntTSL 5 BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Kif9-203ENSMUST00000197248 3184 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Vmn1r22-203ENSMUST00000228076 3011 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Olfr976-202ENSMUST00000213171 2998 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Bbs12-201ENSMUST00000057975 2433 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Gm42397-201ENSMUST00000207472 2002 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Gm6337-201ENSMUST00000168088 1758 ntAPPRIS P5 TSL 5 BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Pde1a-202ENSMUST00000102651 1673 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Pde1a-201ENSMUST00000090756 1661 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Olfr1474-203ENSMUST00000220113 1539 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Pomp-202ENSMUST00000201120 3850 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Trbv23-201ENSMUST00000103279 344 ntAPPRIS ALT2 BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Tcrg-V6-201ENSMUST00000103555 403 ntAPPRIS ALT2 BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 n-R5s172-201ENSMUST00000104508 114 ntBASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Gm13455-201ENSMUST00000118767 517 ntBASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Gm23259-201ENSMUST00000158318 303 ntBASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Speer1-201ENSMUST00000172106 1123 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Gm20475-201ENSMUST00000174884 263 ntTSL 3 BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Gm37376-201ENSMUST00000192176 453 ntBASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Gm44097-201ENSMUST00000204112 563 ntTSL 3 BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Gm17908-201ENSMUST00000205552 1256 ntBASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Gm41231-201ENSMUST00000211525 449 ntTSL 5 BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 Gm35454-202ENSMUST00000214817 1101 ntTSL 5 BASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 AC148328.2-201ENSMUST00000216960 262 ntBASIC6.88□□□□□ -1.31
Upf3bQ3ULL6 AC124601.1-201ENSMUST00000220531 135 ntBASIC6.88□□□□□ -1.31
Retrieved 100 of 76,532 protein–RNA pairs in 94.5 ms