Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.29■□□□□ 0.68
Sf3b1Q99NB9 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Sf3b1Q99NB9 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Sf3b1Q99NB9 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sf3b1Q99NB9 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sf3b1Q99NB9 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.28■□□□□ 0.68
Sf3b1Q99NB9 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC19.27■□□□□ 0.68
Sf3b1Q99NB9 AL672049.1-201ENSMUST00000197943 91 ntBASIC19.27■□□□□ 0.68
Sf3b1Q99NB9 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sf3b1Q99NB9 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sf3b1Q99NB9 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sf3b1Q99NB9 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Sf3b1Q99NB9 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sf3b1Q99NB9 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sf3b1Q99NB9 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.27■□□□□ 0.68
Sf3b1Q99NB9 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Sf3b1Q99NB9 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Sf3b1Q99NB9 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Golph3-205ENSMUST00000228671 2842 ntBASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Gm10138-203ENSMUST00000206952 366 ntBASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 AC158538.1-201ENSMUST00000225870 294 ntBASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Mtag2-201ENSMUST00000058665 714 ntBASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Sf3b1Q99NB9 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sf3b1Q99NB9 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Sf3b1Q99NB9 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sf3b1Q99NB9 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.24■□□□□ 0.67
Sf3b1Q99NB9 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.24■□□□□ 0.67
Sf3b1Q99NB9 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Sf3b1Q99NB9 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sf3b1Q99NB9 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Sf3b1Q99NB9 Gm9885-202ENSMUST00000186234 2209 ntBASIC19.23■□□□□ 0.67
Sf3b1Q99NB9 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sf3b1Q99NB9 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Sf3b1Q99NB9 Rncr4-201ENSMUST00000194541 2234 ntBASIC19.23■□□□□ 0.67
Sf3b1Q99NB9 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC19.23■□□□□ 0.67
Sf3b1Q99NB9 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.23■□□□□ 0.67
Sf3b1Q99NB9 Gm37055-201ENSMUST00000191866 133 ntBASIC19.23■□□□□ 0.67
Sf3b1Q99NB9 Gm38285-201ENSMUST00000192928 922 ntBASIC19.23■□□□□ 0.67
Sf3b1Q99NB9 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Sf3b1Q99NB9 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sf3b1Q99NB9 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sf3b1Q99NB9 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sf3b1Q99NB9 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sf3b1Q99NB9 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms