Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdk5rap3Q99LM2 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC18.88■□□□□ 0.61
Cdk5rap3Q99LM2 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdk5rap3Q99LM2 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdk5rap3Q99LM2 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdk5rap3Q99LM2 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdk5rap3Q99LM2 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Cdk5rap3Q99LM2 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
Cdk5rap3Q99LM2 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cdk5rap3Q99LM2 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cdk5rap3Q99LM2 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cdk5rap3Q99LM2 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cdk5rap3Q99LM2 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC18.87■□□□□ 0.61
Cdk5rap3Q99LM2 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Cdk5rap3Q99LM2 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdk5rap3Q99LM2 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdk5rap3Q99LM2 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Cdk5rap3Q99LM2 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdk5rap3Q99LM2 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdk5rap3Q99LM2 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdk5rap3Q99LM2 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC18.84■□□□□ 0.61
Cdk5rap3Q99LM2 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC18.84■□□□□ 0.61
Cdk5rap3Q99LM2 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdk5rap3Q99LM2 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdk5rap3Q99LM2 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cdk5rap3Q99LM2 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cdk5rap3Q99LM2 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Cdk5rap3Q99LM2 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Cdk5rap3Q99LM2 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Cdk5rap3Q99LM2 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cdk5rap3Q99LM2 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cdk5rap3Q99LM2 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Cdk5rap3Q99LM2 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cdk5rap3Q99LM2 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cdk5rap3Q99LM2 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Cdk5rap3Q99LM2 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cdk5rap3Q99LM2 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Gm37811-201ENSMUST00000192416 2601 ntBASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Gm13234-201ENSMUST00000120010 747 ntBASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdk5rap3Q99LM2 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
Cdk5rap3Q99LM2 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdk5rap3Q99LM2 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC18.81■□□□□ 0.6
Cdk5rap3Q99LM2 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdk5rap3Q99LM2 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Cdk5rap3Q99LM2 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdk5rap3Q99LM2 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdk5rap3Q99LM2 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms