Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim56Q80VI1 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim56Q80VI1 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Trim56Q80VI1 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Trim56Q80VI1 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC21.52■■□□□ 1.04
Trim56Q80VI1 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Trim56Q80VI1 AC163280.1-201ENSMUST00000228194 1100 ntBASIC21.52■■□□□ 1.04
Trim56Q80VI1 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim56Q80VI1 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
Trim56Q80VI1 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
Trim56Q80VI1 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Trim56Q80VI1 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Trim56Q80VI1 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trim56Q80VI1 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trim56Q80VI1 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC21.51■■□□□ 1.03
Trim56Q80VI1 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Trim56Q80VI1 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trim56Q80VI1 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trim56Q80VI1 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trim56Q80VI1 Gm38285-201ENSMUST00000192928 922 ntBASIC21.5■■□□□ 1.03
Trim56Q80VI1 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC21.5■■□□□ 1.03
Trim56Q80VI1 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Trim56Q80VI1 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Trim56Q80VI1 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trim56Q80VI1 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trim56Q80VI1 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trim56Q80VI1 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Trim56Q80VI1 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim56Q80VI1 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim56Q80VI1 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC21.49■■□□□ 1.03
Trim56Q80VI1 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim56Q80VI1 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim56Q80VI1 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC21.49■■□□□ 1.03
Trim56Q80VI1 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim56Q80VI1 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim56Q80VI1 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Trim56Q80VI1 Gm35558-201ENSMUST00000222675 2219 ntBASIC21.49■■□□□ 1.03
Trim56Q80VI1 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Trim56Q80VI1 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim56Q80VI1 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim56Q80VI1 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim56Q80VI1 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim56Q80VI1 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
Trim56Q80VI1 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim56Q80VI1 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
Trim56Q80VI1 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim56Q80VI1 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC21.48■■□□□ 1.03
Trim56Q80VI1 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
Trim56Q80VI1 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim56Q80VI1 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Trim56Q80VI1 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trim56Q80VI1 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trim56Q80VI1 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Trim56Q80VI1 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trim56Q80VI1 Gm13168-201ENSMUST00000121771 632 ntBASIC21.47■■□□□ 1.03
Trim56Q80VI1 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trim56Q80VI1 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC21.47■■□□□ 1.03
Trim56Q80VI1 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC21.47■■□□□ 1.03
Trim56Q80VI1 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trim56Q80VI1 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Trim56Q80VI1 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Trim56Q80VI1 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trim56Q80VI1 Tgds-204ENSMUST00000228543 1594 ntBASIC21.46■■□□□ 1.03
Trim56Q80VI1 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trim56Q80VI1 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trim56Q80VI1 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trim56Q80VI1 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
Trim56Q80VI1 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Trim56Q80VI1 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Trim56Q80VI1 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Trim56Q80VI1 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Trim56Q80VI1 Gm5643-201ENSMUST00000117081 966 ntBASIC21.45■■□□□ 1.02
Trim56Q80VI1 Alkbh1-212ENSMUST00000185301 408 ntBASIC21.45■■□□□ 1.02
Trim56Q80VI1 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC21.45■■□□□ 1.02
Trim56Q80VI1 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Trim56Q80VI1 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Trim56Q80VI1 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Trim56Q80VI1 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Trim56Q80VI1 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Trim56Q80VI1 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC21.45■■□□□ 1.02
Trim56Q80VI1 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trim56Q80VI1 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trim56Q80VI1 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC21.44■■□□□ 1.02
Trim56Q80VI1 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trim56Q80VI1 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trim56Q80VI1 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trim56Q80VI1 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trim56Q80VI1 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trim56Q80VI1 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trim56Q80VI1 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trim56Q80VI1 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trim56Q80VI1 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Trim56Q80VI1 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trim56Q80VI1 Fam105a-203ENSMUST00000226170 3043 ntBASIC21.43■■□□□ 1.02
Trim56Q80VI1 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trim56Q80VI1 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trim56Q80VI1 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Trim56Q80VI1 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Trim56Q80VI1 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trim56Q80VI1 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms