Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ubfd1Q78JW9 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Gm15375-201ENSMUST00000119510 849 ntBASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ubfd1Q78JW9 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 Gm9885-202ENSMUST00000186234 2209 ntBASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 Gm44544-201ENSMUST00000207052 1844 ntBASIC17.68■□□□□ 0.42
Ubfd1Q78JW9 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ubfd1Q78JW9 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ubfd1Q78JW9 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ubfd1Q78JW9 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ubfd1Q78JW9 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ubfd1Q78JW9 Mir1199-201ENSMUST00000117015 119 ntBASIC17.67■□□□□ 0.42
Ubfd1Q78JW9 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ubfd1Q78JW9 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ubfd1Q78JW9 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ubfd1Q78JW9 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Ubfd1Q78JW9 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ubfd1Q78JW9 CT010444.2-201ENSMUST00000217877 1629 ntBASIC17.66■□□□□ 0.42
Ubfd1Q78JW9 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ubfd1Q78JW9 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ubfd1Q78JW9 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC17.66■□□□□ 0.42
Ubfd1Q78JW9 Mir6349-201ENSMUST00000184059 97 ntBASIC17.66■□□□□ 0.42
Ubfd1Q78JW9 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ubfd1Q78JW9 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ubfd1Q78JW9 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ubfd1Q78JW9 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ubfd1Q78JW9 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC17.66■□□□□ 0.42
Ubfd1Q78JW9 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ubfd1Q78JW9 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ubfd1Q78JW9 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ubfd1Q78JW9 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ubfd1Q78JW9 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.65■□□□□ 0.42
Ubfd1Q78JW9 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ubfd1Q78JW9 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ubfd1Q78JW9 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ubfd1Q78JW9 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Ubfd1Q78JW9 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ubfd1Q78JW9 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ubfd1Q78JW9 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Ubfd1Q78JW9 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Ubfd1Q78JW9 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ubfd1Q78JW9 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ubfd1Q78JW9 Gm45560-201ENSMUST00000211492 1472 ntBASIC17.64■□□□□ 0.41
Ubfd1Q78JW9 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ubfd1Q78JW9 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ubfd1Q78JW9 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ubfd1Q78JW9 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ubfd1Q78JW9 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC17.64■□□□□ 0.41
Ubfd1Q78JW9 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ubfd1Q78JW9 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ubfd1Q78JW9 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
Ubfd1Q78JW9 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ubfd1Q78JW9 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC17.64■□□□□ 0.41
Ubfd1Q78JW9 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.64■□□□□ 0.41
Ubfd1Q78JW9 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ubfd1Q78JW9 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ubfd1Q78JW9 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ubfd1Q78JW9 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 65.2 ms