Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Gm12085-201ENSMUST00000119263 940 ntBASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Gm27463-201ENSMUST00000183569 57 ntBASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ddx55Q6ZPL9 AA414768-201ENSMUST00000121924 1257 ntBASIC20.8■□□□□ 0.92
Ddx55Q6ZPL9 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC20.8■□□□□ 0.92
Ddx55Q6ZPL9 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ddx55Q6ZPL9 Gm10517-202ENSMUST00000192970 758 ntBASIC20.8■□□□□ 0.92
Ddx55Q6ZPL9 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC20.8■□□□□ 0.92
Ddx55Q6ZPL9 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
Ddx55Q6ZPL9 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Ddx55Q6ZPL9 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ddx55Q6ZPL9 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ddx55Q6ZPL9 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ddx55Q6ZPL9 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Ddx55Q6ZPL9 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ddx55Q6ZPL9 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ddx55Q6ZPL9 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ddx55Q6ZPL9 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC20.79■□□□□ 0.92
Ddx55Q6ZPL9 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC20.79■□□□□ 0.92
Ddx55Q6ZPL9 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ddx55Q6ZPL9 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ddx55Q6ZPL9 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
Ddx55Q6ZPL9 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ddx55Q6ZPL9 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ddx55Q6ZPL9 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ddx55Q6ZPL9 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ddx55Q6ZPL9 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Gm18688-201ENSMUST00000204695 1859 ntBASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Gm33142-201ENSMUST00000193913 867 ntBASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Gm43353-201ENSMUST00000199224 1295 ntBASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx55Q6ZPL9 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx55Q6ZPL9 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx55Q6ZPL9 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx55Q6ZPL9 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx55Q6ZPL9 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx55Q6ZPL9 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC20.77■□□□□ 0.92
Ddx55Q6ZPL9 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx55Q6ZPL9 Gm27741-201ENSMUST00000185060 237 ntBASIC20.77■□□□□ 0.92
Ddx55Q6ZPL9 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx55Q6ZPL9 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx55Q6ZPL9 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Ddx55Q6ZPL9 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Ddx55Q6ZPL9 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Gm38027-201ENSMUST00000192315 235 ntBASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ddx55Q6ZPL9 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddx55Q6ZPL9 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Ddx55Q6ZPL9 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddx55Q6ZPL9 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Ddx55Q6ZPL9 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC20.75■□□□□ 0.91
Ddx55Q6ZPL9 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
Ddx55Q6ZPL9 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddx55Q6ZPL9 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC20.75■□□□□ 0.91
Ddx55Q6ZPL9 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddx55Q6ZPL9 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.75■□□□□ 0.91
Ddx55Q6ZPL9 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddx55Q6ZPL9 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Ddx55Q6ZPL9 Mir5130-201ENSMUST00000175160 84 ntBASIC20.74■□□□□ 0.91
Ddx55Q6ZPL9 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms