Protein–RNA interactions for Protein: Q4FZC9

Syne3, Nesprin-3, mousemouse

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne3Q4FZC9 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne3Q4FZC9 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC19.32■□□□□ 0.68
Syne3Q4FZC9 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Syne3Q4FZC9 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.31■□□□□ 0.68
Syne3Q4FZC9 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Syne3Q4FZC9 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Syne3Q4FZC9 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Syne3Q4FZC9 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC19.31■□□□□ 0.68
Syne3Q4FZC9 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.31■□□□□ 0.68
Syne3Q4FZC9 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Syne3Q4FZC9 Gm6365-201ENSMUST00000054711 744 ntBASIC19.31■□□□□ 0.68
Syne3Q4FZC9 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Syne3Q4FZC9 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Syne3Q4FZC9 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Syne3Q4FZC9 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Syne3Q4FZC9 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne3Q4FZC9 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne3Q4FZC9 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne3Q4FZC9 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne3Q4FZC9 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne3Q4FZC9 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne3Q4FZC9 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne3Q4FZC9 Dmtn-207ENSMUST00000228001 2437 ntBASIC19.29■□□□□ 0.68
Syne3Q4FZC9 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne3Q4FZC9 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Syne3Q4FZC9 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC19.29■□□□□ 0.68
Syne3Q4FZC9 Gm42555-201ENSMUST00000199304 1039 ntBASIC19.29■□□□□ 0.68
Syne3Q4FZC9 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne3Q4FZC9 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne3Q4FZC9 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne3Q4FZC9 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne3Q4FZC9 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Syne3Q4FZC9 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Gm42922-201ENSMUST00000195887 2078 ntBASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Gm7290-201ENSMUST00000104990 617 ntBASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Gm12918-201ENSMUST00000120234 636 ntBASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Gm15710-201ENSMUST00000121821 636 ntBASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Gm5075-201ENSMUST00000196916 622 ntBASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Syne3Q4FZC9 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne3Q4FZC9 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne3Q4FZC9 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Syne3Q4FZC9 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Syne3Q4FZC9 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Syne3Q4FZC9 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Syne3Q4FZC9 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC19.27■□□□□ 0.68
Syne3Q4FZC9 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
Syne3Q4FZC9 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
Syne3Q4FZC9 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Syne3Q4FZC9 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Syne3Q4FZC9 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Syne3Q4FZC9 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Syne3Q4FZC9 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Syne3Q4FZC9 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Syne3Q4FZC9 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC19.26■□□□□ 0.67
Syne3Q4FZC9 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Syne3Q4FZC9 Gm12933-201ENSMUST00000120203 872 ntBASIC19.26■□□□□ 0.67
Syne3Q4FZC9 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC19.26■□□□□ 0.67
Syne3Q4FZC9 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Syne3Q4FZC9 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Syne3Q4FZC9 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Syne3Q4FZC9 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Syne3Q4FZC9 Gm10602-201ENSMUST00000098239 609 ntBASIC19.26■□□□□ 0.67
Syne3Q4FZC9 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Syne3Q4FZC9 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Syne3Q4FZC9 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Syne3Q4FZC9 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Syne3Q4FZC9 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC19.25■□□□□ 0.67
Syne3Q4FZC9 Gm43213-201ENSMUST00000151866 1790 ntBASIC19.25■□□□□ 0.67
Syne3Q4FZC9 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Syne3Q4FZC9 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Syne3Q4FZC9 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Syne3Q4FZC9 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms