Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm13436-201ENSMUST00000120418 567 ntBASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Gm44544-201ENSMUST00000207052 1844 ntBASIC19.18■□□□□ 0.66
Upf3aQ3ULJ3 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3aQ3ULJ3 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3aQ3ULJ3 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3aQ3ULJ3 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3aQ3ULJ3 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3aQ3ULJ3 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3aQ3ULJ3 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3aQ3ULJ3 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Upf3aQ3ULJ3 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3aQ3ULJ3 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3aQ3ULJ3 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
Upf3aQ3ULJ3 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3aQ3ULJ3 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC19.17■□□□□ 0.66
Upf3aQ3ULJ3 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3aQ3ULJ3 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3aQ3ULJ3 Gm10654-201ENSMUST00000098653 1633 ntBASIC19.14■□□□□ 0.66
Upf3aQ3ULJ3 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Upf3aQ3ULJ3 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3aQ3ULJ3 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
Upf3aQ3ULJ3 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3aQ3ULJ3 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC19.13■□□□□ 0.65
Upf3aQ3ULJ3 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3aQ3ULJ3 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms