Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Ddb1Q3U1J4 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Ddb1Q3U1J4 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC23.23■■□□□ 1.31
Ddb1Q3U1J4 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ddb1Q3U1J4 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Ddb1Q3U1J4 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ddb1Q3U1J4 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC23.23■■□□□ 1.31
Ddb1Q3U1J4 Gm37805-201ENSMUST00000192612 1094 ntBASIC23.23■■□□□ 1.31
Ddb1Q3U1J4 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC23.23■■□□□ 1.31
Ddb1Q3U1J4 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ddb1Q3U1J4 Gm8258-201ENSMUST00000055593 1449 ntBASIC23.23■■□□□ 1.31
Ddb1Q3U1J4 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ddb1Q3U1J4 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ddb1Q3U1J4 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ddb1Q3U1J4 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ddb1Q3U1J4 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
Ddb1Q3U1J4 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC23.22■■□□□ 1.31
Ddb1Q3U1J4 Gm7461-201ENSMUST00000058918 827 ntBASIC23.22■■□□□ 1.31
Ddb1Q3U1J4 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Ddb1Q3U1J4 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Ddb1Q3U1J4 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ddb1Q3U1J4 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ddb1Q3U1J4 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC23.21■■□□□ 1.31
Ddb1Q3U1J4 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ddb1Q3U1J4 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ddb1Q3U1J4 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ddb1Q3U1J4 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ddb1Q3U1J4 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
Ddb1Q3U1J4 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Ddb1Q3U1J4 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Ddb1Q3U1J4 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Ddb1Q3U1J4 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Ddb1Q3U1J4 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Ddb1Q3U1J4 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Ddb1Q3U1J4 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Ddb1Q3U1J4 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC23.2■■□□□ 1.3
Ddb1Q3U1J4 Gm4217-201ENSMUST00000182243 1002 ntBASIC23.2■■□□□ 1.3
Ddb1Q3U1J4 Gm9694-201ENSMUST00000193347 1189 ntBASIC23.2■■□□□ 1.3
Ddb1Q3U1J4 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Ddb1Q3U1J4 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC23.2■■□□□ 1.3
Ddb1Q3U1J4 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Ddb1Q3U1J4 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
Ddb1Q3U1J4 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ddb1Q3U1J4 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ddb1Q3U1J4 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ddb1Q3U1J4 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ddb1Q3U1J4 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC23.19■■□□□ 1.3
Ddb1Q3U1J4 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ddb1Q3U1J4 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ddb1Q3U1J4 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ddb1Q3U1J4 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC23.19■■□□□ 1.3
Ddb1Q3U1J4 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Ddb1Q3U1J4 Gm27704-201ENSMUST00000185094 107 ntBASIC23.19■■□□□ 1.3
Ddb1Q3U1J4 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Ddb1Q3U1J4 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ddb1Q3U1J4 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ddb1Q3U1J4 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
Ddb1Q3U1J4 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Ddb1Q3U1J4 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ddb1Q3U1J4 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ddb1Q3U1J4 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC23.18■■□□□ 1.3
Ddb1Q3U1J4 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Ddb1Q3U1J4 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ddb1Q3U1J4 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ddb1Q3U1J4 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ddb1Q3U1J4 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ddb1Q3U1J4 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ddb1Q3U1J4 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
Ddb1Q3U1J4 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ddb1Q3U1J4 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ddb1Q3U1J4 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Ddb1Q3U1J4 Gm16061-201ENSMUST00000122167 857 ntBASIC23.17■■□□□ 1.3
Ddb1Q3U1J4 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Ddb1Q3U1J4 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
Ddb1Q3U1J4 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ddb1Q3U1J4 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
Ddb1Q3U1J4 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ddb1Q3U1J4 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
Ddb1Q3U1J4 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ddb1Q3U1J4 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC23.16■■□□□ 1.3
Ddb1Q3U1J4 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Ddb1Q3U1J4 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ddb1Q3U1J4 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ddb1Q3U1J4 Gm20634-201ENSMUST00000090779 2956 ntBASIC23.16■■□□□ 1.3
Ddb1Q3U1J4 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC23.16■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms