Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col28a1Q2UY11 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Col28a1Q2UY11 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col28a1Q2UY11 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col28a1Q2UY11 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Col28a1Q2UY11 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col28a1Q2UY11 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col28a1Q2UY11 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Col28a1Q2UY11 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Col28a1Q2UY11 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col28a1Q2UY11 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col28a1Q2UY11 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col28a1Q2UY11 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col28a1Q2UY11 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Fst-202ENSMUST00000223640 2612 ntBASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Gm18671-201ENSMUST00000214826 683 ntBASIC17.62■□□□□ 0.41
Col28a1Q2UY11 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Fcho2-208ENSMUST00000224992 2964 ntBASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col28a1Q2UY11 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col28a1Q2UY11 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col28a1Q2UY11 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
Col28a1Q2UY11 Gm7860-201ENSMUST00000121190 879 ntBASIC17.61■□□□□ 0.41
Col28a1Q2UY11 Gm27011-201ENSMUST00000182352 972 ntBASIC17.61■□□□□ 0.41
Col28a1Q2UY11 CT025689.6-201ENSMUST00000224991 1104 ntBASIC17.61■□□□□ 0.41
Col28a1Q2UY11 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col28a1Q2UY11 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col28a1Q2UY11 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col28a1Q2UY11 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Col28a1Q2UY11 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col28a1Q2UY11 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col28a1Q2UY11 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col28a1Q2UY11 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col28a1Q2UY11 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms