Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Nkx3-1P97436 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC15.72■□□□□ 0.11
Nkx3-1P97436 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Nkx3-1P97436 Mir5122-201ENSMUST00000175004 89 ntBASIC15.72■□□□□ 0.11
Nkx3-1P97436 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Nkx3-1P97436 Hsf1-204ENSMUST00000226872 2104 ntBASIC15.72■□□□□ 0.11
Nkx3-1P97436 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Nkx3-1P97436 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Nkx3-1P97436 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Nkx3-1P97436 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Nkx3-1P97436 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
Nkx3-1P97436 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Nkx3-1P97436 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
Nkx3-1P97436 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Nkx3-1P97436 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
Nkx3-1P97436 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Nkx3-1P97436 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
Nkx3-1P97436 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Gm10138-203ENSMUST00000206952 366 ntBASIC15.7■□□□□ 0.1
Nkx3-1P97436 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC15.7■□□□□ 0.1
Nkx3-1P97436 AC124603.1-201ENSMUST00000223843 308 ntBASIC15.7■□□□□ 0.1
Nkx3-1P97436 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Gm5417-201ENSMUST00000079706 384 ntBASIC15.7■□□□□ 0.1
Nkx3-1P97436 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC15.7■□□□□ 0.1
Nkx3-1P97436 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
Nkx3-1P97436 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Gm43183-201ENSMUST00000200632 547 ntBASIC15.69■□□□□ 0.1
Nkx3-1P97436 AC153881.2-201ENSMUST00000214877 204 ntBASIC15.69■□□□□ 0.1
Nkx3-1P97436 Gm9987-201ENSMUST00000069768 567 ntBASIC15.69■□□□□ 0.1
Nkx3-1P97436 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nkx3-1P97436 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Gm11643-201ENSMUST00000119578 864 ntBASIC15.68■□□□□ 0.1
Nkx3-1P97436 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Nkx3-1P97436 AC175538.1-201ENSMUST00000225343 1269 ntBASIC15.68■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms