Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Rfx1P48377 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Rfx1P48377 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rfx1P48377 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rfx1P48377 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC21.74■■□□□ 1.07
Rfx1P48377 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC21.74■■□□□ 1.07
Rfx1P48377 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC21.74■■□□□ 1.07
Rfx1P48377 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC21.74■■□□□ 1.07
Rfx1P48377 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rfx1P48377 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rfx1P48377 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rfx1P48377 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rfx1P48377 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rfx1P48377 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Rfx1P48377 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rfx1P48377 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rfx1P48377 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rfx1P48377 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Rfx1P48377 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Rfx1P48377 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Rfx1P48377 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rfx1P48377 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rfx1P48377 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC21.73■■□□□ 1.07
Rfx1P48377 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC21.73■■□□□ 1.07
Rfx1P48377 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Rfx1P48377 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Rfx1P48377 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rfx1P48377 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rfx1P48377 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Rfx1P48377 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Rfx1P48377 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC21.73■■□□□ 1.07
Rfx1P48377 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Rfx1P48377 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rfx1P48377 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Rfx1P48377 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx1P48377 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Rfx1P48377 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC21.72■■□□□ 1.07
Rfx1P48377 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx1P48377 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx1P48377 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx1P48377 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx1P48377 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC21.72■■□□□ 1.07
Rfx1P48377 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx1P48377 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC21.72■■□□□ 1.07
Rfx1P48377 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx1P48377 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx1P48377 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx1P48377 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx1P48377 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx1P48377 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Rfx1P48377 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Rfx1P48377 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx1P48377 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Rfx1P48377 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC21.71■■□□□ 1.07
Rfx1P48377 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx1P48377 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx1P48377 Gm40848-201ENSMUST00000221998 324 ntBASIC21.71■■□□□ 1.07
Rfx1P48377 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx1P48377 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx1P48377 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx1P48377 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx1P48377 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Rfx1P48377 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx1P48377 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx1P48377 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx1P48377 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx1P48377 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx1P48377 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx1P48377 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx1P48377 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx1P48377 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx1P48377 AC121961.1-201ENSMUST00000218594 1779 ntBASIC21.7■■□□□ 1.06
Rfx1P48377 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
Rfx1P48377 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx1P48377 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx1P48377 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx1P48377 Gm9194-201ENSMUST00000220749 1447 ntBASIC21.7■■□□□ 1.06
Rfx1P48377 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC21.7■■□□□ 1.06
Rfx1P48377 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rfx1P48377 Gm37805-201ENSMUST00000192612 1094 ntBASIC21.69■■□□□ 1.06
Rfx1P48377 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rfx1P48377 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Rfx1P48377 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rfx1P48377 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rfx1P48377 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rfx1P48377 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Rfx1P48377 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC21.68■■□□□ 1.06
Rfx1P48377 Gm19094-201ENSMUST00000209791 1246 ntBASIC21.68■■□□□ 1.06
Rfx1P48377 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rfx1P48377 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rfx1P48377 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rfx1P48377 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rfx1P48377 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rfx1P48377 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Rfx1P48377 AC121598.2-201ENSMUST00000228376 2325 ntBASIC21.68■■□□□ 1.06
Rfx1P48377 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rfx1P48377 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rfx1P48377 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Rfx1P48377 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Rfx1P48377 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms