Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Col2a1P28481 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col2a1P28481 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col2a1P28481 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col2a1P28481 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col2a1P28481 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC20.77■□□□□ 0.92
Col2a1P28481 Gm30025-201ENSMUST00000218555 728 ntBASIC20.77■□□□□ 0.92
Col2a1P28481 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col2a1P28481 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col2a1P28481 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Col2a1P28481 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col2a1P28481 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC20.76■□□□□ 0.91
Col2a1P28481 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col2a1P28481 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col2a1P28481 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col2a1P28481 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col2a1P28481 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Col2a1P28481 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col2a1P28481 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col2a1P28481 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
Col2a1P28481 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Col2a1P28481 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col2a1P28481 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.75■□□□□ 0.91
Col2a1P28481 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col2a1P28481 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC20.75■□□□□ 0.91
Col2a1P28481 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Col2a1P28481 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Col2a1P28481 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC20.75■□□□□ 0.91
Col2a1P28481 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col2a1P28481 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col2a1P28481 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col2a1P28481 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col2a1P28481 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col2a1P28481 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col2a1P28481 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col2a1P28481 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col2a1P28481 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Col2a1P28481 Gm13559-201ENSMUST00000120476 863 ntBASIC20.74■□□□□ 0.91
Col2a1P28481 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Col2a1P28481 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC20.74■□□□□ 0.91
Col2a1P28481 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Col2a1P28481 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col2a1P28481 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col2a1P28481 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC20.73■□□□□ 0.91
Col2a1P28481 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
Col2a1P28481 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col2a1P28481 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC20.73■□□□□ 0.91
Col2a1P28481 Gm11539-201ENSMUST00000119837 557 ntBASIC20.73■□□□□ 0.91
Col2a1P28481 Gm13436-201ENSMUST00000120418 567 ntBASIC20.73■□□□□ 0.91
Col2a1P28481 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col2a1P28481 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col2a1P28481 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col2a1P28481 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC20.73■□□□□ 0.91
Col2a1P28481 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col2a1P28481 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col2a1P28481 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col2a1P28481 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col2a1P28481 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC20.72■□□□□ 0.91
Col2a1P28481 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
Col2a1P28481 Gm10231-201ENSMUST00000181584 441 ntBASIC20.72■□□□□ 0.91
Col2a1P28481 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col2a1P28481 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Col2a1P28481 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC20.72■□□□□ 0.91
Col2a1P28481 Gm10175-202ENSMUST00000208752 441 ntBASIC20.72■□□□□ 0.91
Col2a1P28481 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col2a1P28481 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col2a1P28481 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC20.72■□□□□ 0.91
Col2a1P28481 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col2a1P28481 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col2a1P28481 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col2a1P28481 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col2a1P28481 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col2a1P28481 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col2a1P28481 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Col2a1P28481 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC20.71■□□□□ 0.91
Col2a1P28481 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC20.71■□□□□ 0.91
Col2a1P28481 Gm9987-201ENSMUST00000069768 567 ntBASIC20.71■□□□□ 0.91
Col2a1P28481 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col2a1P28481 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col2a1P28481 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
Col2a1P28481 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Col2a1P28481 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC20.7■□□□□ 0.9
Col2a1P28481 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Col2a1P28481 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col2a1P28481 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC20.7■□□□□ 0.9
Col2a1P28481 Gm43231-201ENSMUST00000202960 2258 ntBASIC20.7■□□□□ 0.9
Col2a1P28481 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col2a1P28481 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col2a1P28481 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC20.7■□□□□ 0.9
Col2a1P28481 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col2a1P28481 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC20.7■□□□□ 0.9
Col2a1P28481 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col2a1P28481 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col2a1P28481 Gm13401-201ENSMUST00000117074 291 ntBASIC20.69■□□□□ 0.9
Col2a1P28481 Gm10517-202ENSMUST00000192970 758 ntBASIC20.69■□□□□ 0.9
Col2a1P28481 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col2a1P28481 AC121577.1-201ENSMUST00000227302 707 ntBASIC20.69■□□□□ 0.9
Col2a1P28481 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
Col2a1P28481 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col2a1P28481 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms