Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC20.07■□□□□ 0.8
Msh3P13705 Gm45141-201ENSMUST00000206502 1888 ntBASIC20.07■□□□□ 0.8
Msh3P13705 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh3P13705 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh3P13705 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh3P13705 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh3P13705 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC20.07■□□□□ 0.8
Msh3P13705 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC20.07■□□□□ 0.8
Msh3P13705 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Msh3P13705 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh3P13705 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh3P13705 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh3P13705 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Msh3P13705 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh3P13705 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh3P13705 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Msh3P13705 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Msh3P13705 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Msh3P13705 Gm38285-201ENSMUST00000192928 922 ntBASIC20.06■□□□□ 0.8
Msh3P13705 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.06■□□□□ 0.8
Msh3P13705 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Msh3P13705 Slc35b2-207ENSMUST00000226086 850 ntBASIC20.06■□□□□ 0.8
Msh3P13705 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh3P13705 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Msh3P13705 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Msh3P13705 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC20.06■□□□□ 0.8
Msh3P13705 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh3P13705 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh3P13705 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh3P13705 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh3P13705 Gm43859-201ENSMUST00000200075 1412 ntBASIC20.05■□□□□ 0.8
Msh3P13705 Gm2399-201ENSMUST00000104944 225 ntBASIC20.05■□□□□ 0.8
Msh3P13705 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh3P13705 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Msh3P13705 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Msh3P13705 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.05■□□□□ 0.8
Msh3P13705 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh3P13705 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Msh3P13705 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
Msh3P13705 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh3P13705 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Msh3P13705 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh3P13705 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh3P13705 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC20.04■□□□□ 0.8
Msh3P13705 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh3P13705 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh3P13705 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Msh3P13705 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Msh3P13705 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh3P13705 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC20.04■□□□□ 0.8
Msh3P13705 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Msh3P13705 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Msh3P13705 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh3P13705 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh3P13705 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
Msh3P13705 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh3P13705 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh3P13705 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh3P13705 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh3P13705 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Msh3P13705 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh3P13705 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh3P13705 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC20.03■□□□□ 0.8
Msh3P13705 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Msh3P13705 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh3P13705 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh3P13705 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.03■□□□□ 0.8
Msh3P13705 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh3P13705 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
Msh3P13705 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
Msh3P13705 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Msh3P13705 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Msh3P13705 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Msh3P13705 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
Msh3P13705 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Msh3P13705 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Msh3P13705 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.02■□□□□ 0.8
Msh3P13705 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Msh3P13705 Zfp783-201ENSMUST00000095946 670 ntBASIC20.02■□□□□ 0.8
Msh3P13705 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Msh3P13705 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Msh3P13705 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC20.02■□□□□ 0.79
Msh3P13705 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Msh3P13705 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Msh3P13705 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Msh3P13705 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Msh3P13705 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Msh3P13705 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
Msh3P13705 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC20.01■□□□□ 0.79
Msh3P13705 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Msh3P13705 Gm37374-201ENSMUST00000194954 1829 ntBASIC20.01■□□□□ 0.79
Msh3P13705 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Msh3P13705 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Msh3P13705 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Msh3P13705 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Msh3P13705 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Msh3P13705 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms