Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb3O54879 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb3O54879 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Hmgb3O54879 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb3O54879 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC15.12■□□□□ 0.01
Hmgb3O54879 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Hmgb3O54879 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb3O54879 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb3O54879 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb3O54879 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC15.12■□□□□ 0.01
Hmgb3O54879 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb3O54879 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Hmgb3O54879 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb3O54879 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb3O54879 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC15.11■□□□□ 0.01
Hmgb3O54879 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
Hmgb3O54879 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb3O54879 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb3O54879 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb3O54879 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Hmgb3O54879 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb3O54879 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb3O54879 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
Hmgb3O54879 Gm18755-201ENSMUST00000218030 1099 ntBASIC15.11■□□□□ 0.01
Hmgb3O54879 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Hmgb3O54879 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb3O54879 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb3O54879 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb3O54879 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb3O54879 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb3O54879 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC15.11■□□□□ 0.01
Hmgb3O54879 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb3O54879 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Hmgb3O54879 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Hmgb3O54879 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Hmgb3O54879 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Hmgb3O54879 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Hmgb3O54879 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Hmgb3O54879 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Hmgb3O54879 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC15.1■□□□□ 0.01
Hmgb3O54879 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Hmgb3O54879 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC15.1■□□□□ 0.01
Hmgb3O54879 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Hmgb3O54879 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Hmgb3O54879 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Hmgb3O54879 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Hmgb3O54879 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Hmgb3O54879 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC15.09■□□□□ 0.01
Hmgb3O54879 Krt8-ps-201ENSMUST00000208495 945 ntBASIC15.09■□□□□ 0.01
Hmgb3O54879 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC15.09■□□□□ 0.01
Hmgb3O54879 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC15.09■□□□□ 0.01
Hmgb3O54879 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Hmgb3O54879 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Hmgb3O54879 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
Hmgb3O54879 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Hmgb3O54879 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Hmgb3O54879 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Hmgb3O54879 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Hmgb3O54879 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Hmgb3O54879 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Hmgb3O54879 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Hmgb3O54879 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Hmgb3O54879 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Hmgb3O54879 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Hmgb3O54879 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Hmgb3O54879 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Hmgb3O54879 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Hmgb3O54879 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC15.07■□□□□ 0
Hmgb3O54879 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Hmgb3O54879 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
Hmgb3O54879 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Hmgb3O54879 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Hmgb3O54879 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Hmgb3O54879 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
Hmgb3O54879 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Hmgb3O54879 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC15.07■□□□□ 0
Hmgb3O54879 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Hmgb3O54879 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Hmgb3O54879 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Hmgb3O54879 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Hmgb3O54879 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms