Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col6a3E9PWQ3 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col6a3E9PWQ3 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col6a3E9PWQ3 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col6a3E9PWQ3 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC18.37■□□□□ 0.53
Col6a3E9PWQ3 Gm27389-201ENSMUST00000183622 195 ntBASIC18.37■□□□□ 0.53
Col6a3E9PWQ3 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col6a3E9PWQ3 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Col6a3E9PWQ3 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.37■□□□□ 0.53
Col6a3E9PWQ3 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col6a3E9PWQ3 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col6a3E9PWQ3 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col6a3E9PWQ3 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col6a3E9PWQ3 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC18.37■□□□□ 0.53
Col6a3E9PWQ3 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col6a3E9PWQ3 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col6a3E9PWQ3 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.36■□□□□ 0.53
Col6a3E9PWQ3 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC18.36■□□□□ 0.53
Col6a3E9PWQ3 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col6a3E9PWQ3 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Col6a3E9PWQ3 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC18.36■□□□□ 0.53
Col6a3E9PWQ3 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col6a3E9PWQ3 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Col6a3E9PWQ3 Gm15794-201ENSMUST00000120182 631 ntBASIC18.36■□□□□ 0.53
Col6a3E9PWQ3 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col6a3E9PWQ3 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col6a3E9PWQ3 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Col6a3E9PWQ3 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC18.36■□□□□ 0.53
Col6a3E9PWQ3 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col6a3E9PWQ3 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col6a3E9PWQ3 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col6a3E9PWQ3 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col6a3E9PWQ3 Gm5264-201ENSMUST00000190584 848 ntBASIC18.35■□□□□ 0.53
Col6a3E9PWQ3 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Col6a3E9PWQ3 Snhg20-203ENSMUST00000182811 2153 ntBASIC18.35■□□□□ 0.53
Col6a3E9PWQ3 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.35■□□□□ 0.53
Col6a3E9PWQ3 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col6a3E9PWQ3 Gm10418-201ENSMUST00000100943 576 ntBASIC18.35■□□□□ 0.53
Col6a3E9PWQ3 Gm8000-201ENSMUST00000188378 592 ntBASIC18.35■□□□□ 0.53
Col6a3E9PWQ3 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col6a3E9PWQ3 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col6a3E9PWQ3 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col6a3E9PWQ3 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col6a3E9PWQ3 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col6a3E9PWQ3 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col6a3E9PWQ3 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col6a3E9PWQ3 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Col6a3E9PWQ3 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col6a3E9PWQ3 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col6a3E9PWQ3 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Col6a3E9PWQ3 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC18.33■□□□□ 0.52
Col6a3E9PWQ3 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Col6a3E9PWQ3 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC18.33■□□□□ 0.52
Col6a3E9PWQ3 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col6a3E9PWQ3 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Col6a3E9PWQ3 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col6a3E9PWQ3 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col6a3E9PWQ3 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
Col6a3E9PWQ3 Gm2213-201ENSMUST00000197485 688 ntBASIC18.33■□□□□ 0.52
Col6a3E9PWQ3 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col6a3E9PWQ3 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Col6a3E9PWQ3 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col6a3E9PWQ3 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Col6a3E9PWQ3 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
Col6a3E9PWQ3 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col6a3E9PWQ3 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Col6a3E9PWQ3 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC18.32■□□□□ 0.52
Col6a3E9PWQ3 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col6a3E9PWQ3 Gm13474-201ENSMUST00000122466 815 ntBASIC18.32■□□□□ 0.52
Col6a3E9PWQ3 Gm27321-201ENSMUST00000185021 205 ntBASIC18.32■□□□□ 0.52
Col6a3E9PWQ3 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col6a3E9PWQ3 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col6a3E9PWQ3 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col6a3E9PWQ3 AC159301.1-201ENSMUST00000225130 1182 ntBASIC18.31■□□□□ 0.52
Col6a3E9PWQ3 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col6a3E9PWQ3 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col6a3E9PWQ3 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col6a3E9PWQ3 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col6a3E9PWQ3 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Col6a3E9PWQ3 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col6a3E9PWQ3 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col6a3E9PWQ3 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col6a3E9PWQ3 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC18.31■□□□□ 0.52
Col6a3E9PWQ3 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col6a3E9PWQ3 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms