Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Tex28-202ENSMUST00000114328 1421 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
Upf3bQ3ULL6 Gm38178-201ENSMUST00000194502 2471 ntBASIC7.07□□□□□ -1.28
Upf3bQ3ULL6 Gm38366-201ENSMUST00000193127 1934 ntBASIC7.07□□□□□ -1.28
Upf3bQ3ULL6 Cyb5r2-201ENSMUST00000052438 2772 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
Upf3bQ3ULL6 Gm12292-201ENSMUST00000122911 2433 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
Upf3bQ3ULL6 Cntn4-202ENSMUST00000089208 5179 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
Upf3bQ3ULL6 Gm37772-201ENSMUST00000191635 1394 ntBASIC7.07□□□□□ -1.28
Upf3bQ3ULL6 Vmn2r11-201ENSMUST00000164875 2586 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
Upf3bQ3ULL6 Slc7a11-201ENSMUST00000029297 9223 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
Upf3bQ3ULL6 2500004C02Rik-202ENSMUST00000128026 1898 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
Upf3bQ3ULL6 Gtpbp4-204ENSMUST00000222098 8783 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm44886-201ENSMUST00000209009 1304 ntTSL 5 BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm9226-201ENSMUST00000188352 3489 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 AC154642.2-201ENSMUST00000223657 2485 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 AC165080.3-201ENSMUST00000217162 3116 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Matr3-215ENSMUST00000190121 2638 ntTSL 5 BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm37033-201ENSMUST00000193199 7350 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Zfp266-201ENSMUST00000068296 2266 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Plek-201ENSMUST00000020321 3896 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm10555-201ENSMUST00000193178 1791 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Dennd2c-202ENSMUST00000172288 4979 ntAPPRIS P2 TSL 1 (best) BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Olfr1390-202ENSMUST00000215014 2875 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Wfdc15b-202ENSMUST00000109376 571 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm14295-201ENSMUST00000118012 1213 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm15616-201ENSMUST00000118662 375 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Rps12-ps19-201ENSMUST00000119773 400 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm11796-201ENSMUST00000120208 972 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm15564-201ENSMUST00000144134 545 ntTSL 3 BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 C230035I16Rik-202ENSMUST00000153753 643 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm22604-201ENSMUST00000157604 311 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm25435-201ENSMUST00000158277 267 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Fabp12-204ENSMUST00000172126 779 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 D930016D06Rik-202ENSMUST00000181620 3805 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Wfdc15b-201ENSMUST00000018355 510 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Mir6348-201ENSMUST00000183804 120 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm8883-204ENSMUST00000189680 699 ntTSL 2 BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm9504-201ENSMUST00000196322 468 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm43063-201ENSMUST00000198198 1081 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm16571-202ENSMUST00000203839 585 ntTSL 5 BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm31409-201ENSMUST00000209894 710 ntTSL 5 BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm45345-201ENSMUST00000211427 555 ntTSL 2 BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 AC139568.1-201ENSMUST00000222878 486 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 AC154573.2-201ENSMUST00000224174 378 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 AC154806.1-203ENSMUST00000227370 1032 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 n-R5s217-201ENSMUST00000083341 116 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 3000002C10Rik-203ENSMUST00000144161 3977 ntTSL 2 BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Gm37925-201ENSMUST00000195352 4255 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Zdhhc9-202ENSMUST00000088935 2815 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Tlr4-202ENSMUST00000107365 1866 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 AC131667.1-201ENSMUST00000214665 2175 ntBASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Slamf7-202ENSMUST00000192024 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 Vmn2r114-201ENSMUST00000168033 2571 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
Upf3bQ3ULL6 C87436-201ENSMUST00000050497 2534 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm9603-201ENSMUST00000165814 2063 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm3542-201ENSMUST00000169362 2063 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Ift80-202ENSMUST00000107812 4063 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm38811-201ENSMUST00000203781 3478 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 CT030159.2-201ENSMUST00000221233 1742 ntTSL 5 BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Nedd9-201ENSMUST00000021794 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Maml2-203ENSMUST00000177755 2264 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm25877-201ENSMUST00000104326 129 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm24888-201ENSMUST00000104387 130 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm9311-201ENSMUST00000118042 1269 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm11198-201ENSMUST00000119771 974 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm12630-201ENSMUST00000121575 784 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm5809-201ENSMUST00000121854 529 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Dnah2os-201ENSMUST00000124108 859 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm12290-201ENSMUST00000145095 2112 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm22820-201ENSMUST00000157205 329 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm25989-201ENSMUST00000158761 133 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm6401-202ENSMUST00000164232 618 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm17079-201ENSMUST00000167231 666 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Mir5617-201ENSMUST00000176786 57 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm27186-201ENSMUST00000184223 307 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm28023-201ENSMUST00000184556 60 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm27825-201ENSMUST00000184586 60 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm27970-201ENSMUST00000184854 407 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 C78334-201ENSMUST00000186632 600 ntTSL 3 BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm2453-201ENSMUST00000193383 357 ntTSL 5 BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Ighv8-3-201ENSMUST00000194985 295 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm7452-201ENSMUST00000200764 788 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm43263-201ENSMUST00000201619 560 ntTSL 5 BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm18838-201ENSMUST00000204855 886 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 AC124510.2-201ENSMUST00000221958 683 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 CT025667.1-201ENSMUST00000225872 382 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Sprr2a3-201ENSMUST00000090872 682 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Smarca2-242ENSMUST00000208751 1846 ntTSL 5 BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 AC153143.2-201ENSMUST00000220999 1804 ntBASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Nr6a1-210ENSMUST00000168098 5877 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Sh2d4b-201ENSMUST00000070328 3086 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Prkg2-204ENSMUST00000162147 1389 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 1700041M19Rik-205ENSMUST00000208105 1356 ntTSL 5 BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gsdme-202ENSMUST00000101405 4383 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Gm28798-201ENSMUST00000186372 2161 ntTSL 5 BASIC7.05□□□□□ -1.28
Upf3bQ3ULL6 Pcdh15-204ENSMUST00000105426 6802 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
Upf3bQ3ULL6 D630023O14Rik-201ENSMUST00000191913 3099 ntBASIC7.04□□□□□ -1.28
Upf3bQ3ULL6 Ptpra-202ENSMUST00000077303 3066 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
Upf3bQ3ULL6 Slc16a4-201ENSMUST00000029502 2248 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
Upf3bQ3ULL6 Dnajb4-202ENSMUST00000050073 2464 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
Upf3bQ3ULL6 Olfr734-203ENSMUST00000217152 4416 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms