Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm13040-201ENSMUST00000094521 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
Nkx3-1P97436 Elmod2-201ENSMUST00000053902 4319 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
Nkx3-1P97436 Olfr1226-205ENSMUST00000216445 7046 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
Nkx3-1P97436 CT009696.4-202ENSMUST00000213560 2248 ntTSL 5 BASIC5.83□□□□□ -1.48
Nkx3-1P97436 Gm29379-201ENSMUST00000186305 2166 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
Nkx3-1P97436 Gm28276-201ENSMUST00000188508 2166 ntTSL 5 BASIC5.83□□□□□ -1.48
Nkx3-1P97436 Gm28201-201ENSMUST00000189989 2166 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
Nkx3-1P97436 Gm14849-201ENSMUST00000122293 2846 ntBASIC5.83□□□□□ -1.48
Nkx3-1P97436 Gm14615-201ENSMUST00000117575 1816 ntBASIC5.83□□□□□ -1.48
Nkx3-1P97436 Adh7-201ENSMUST00000090171 3432 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
Nkx3-1P97436 Sin3a-201ENSMUST00000049169 4845 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Trp53bp1-201ENSMUST00000110647 9405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Daw1-203ENSMUST00000113436 1351 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm45084-201ENSMUST00000207096 1957 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Tdrd3-203ENSMUST00000169504 5280 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Tbc1d23-203ENSMUST00000226586 3112 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 AC125487.2-201ENSMUST00000219810 1300 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 AC115760.1-201ENSMUST00000225160 1327 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Vmn1r89-207ENSMUST00000227390 1348 ntAPPRIS ALT2 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Fam49a-202ENSMUST00000069066 9452 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Clock-205ENSMUST00000202651 9744 ntAPPRIS P3 TSL 2 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Cxcr2-202ENSMUST00000106899 3046 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Bmi1-202ENSMUST00000051929 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm24272-201ENSMUST00000102329 98 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Trav8d-1-201ENSMUST00000103580 400 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm11245-201ENSMUST00000119419 1037 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm15181-201ENSMUST00000120142 177 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm2800-201ENSMUST00000122988 641 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm16248-201ENSMUST00000124238 243 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm13299-201ENSMUST00000133644 425 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm13307-202ENSMUST00000142990 425 ntTSL 5 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm25550-201ENSMUST00000158079 128 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm26652-201ENSMUST00000180592 373 ntTSL 3 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 1700044C05Rik-201ENSMUST00000186060 898 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm18799-201ENSMUST00000189104 913 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm8883-204ENSMUST00000189680 699 ntTSL 2 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm28620-201ENSMUST00000190463 439 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Lemd1-209ENSMUST00000191418 726 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm44386-201ENSMUST00000204288 429 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm44163-201ENSMUST00000205140 475 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm44911-201ENSMUST00000208436 1062 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Olfr1449-202ENSMUST00000208624 1296 ntAPPRIS P1 TSL 3 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 AC160138.1-201ENSMUST00000217965 588 ntTSL 3 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Olfr602-ps1-202ENSMUST00000218213 1169 ntTSL 5 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 AL713985.1-201ENSMUST00000219030 420 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm9231-201ENSMUST00000220817 1009 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 AL671874.1-201ENSMUST00000223746 1123 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Cma2-202ENSMUST00000228263 857 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Rpl37a-201ENSMUST00000059980 558 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Skint10-202ENSMUST00000068851 493 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Olfr687-201ENSMUST00000098154 938 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Kmo-201ENSMUST00000040250 2695 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Lrrc6-201ENSMUST00000023006 2084 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Sntg1-210ENSMUST00000191683 4510 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Brox-202ENSMUST00000163528 3413 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm20768-201ENSMUST00000199527 2338 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 CT009757.6-201ENSMUST00000220661 2312 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Nsd2-205ENSMUST00000114399 7786 ntTSL 5 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Rftn2-201ENSMUST00000027121 3677 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Vmn1r51-201ENSMUST00000072859 2567 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm20706-201ENSMUST00000175985 2023 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Zfp397-201ENSMUST00000060762 5472 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Dach2-203ENSMUST00000113379 2512 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 CT025566.1-202ENSMUST00000224800 2511 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Gm12021-201ENSMUST00000121061 1746 ntBASIC5.82□□□□□ -1.48
Nkx3-1P97436 Fbxw21-203ENSMUST00000198076 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Olfr845-202ENSMUST00000213344 3530 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 D5Ertd577e-202ENSMUST00000202481 2469 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Lifr-207ENSMUST00000227727 2489 ntAPPRIS ALT2 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Abcc9-201ENSMUST00000073173 7433 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Hcrtr2-201ENSMUST00000063140 3761 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Olfr694-203ENSMUST00000216118 5035 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Klra1-201ENSMUST00000032288 1668 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Ube4a-201ENSMUST00000117506 6039 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Nkx3-1P97436 Hsd3b2-202ENSMUST00000107022 3695 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
Nkx3-1P97436 AC165260.6-206ENSMUST00000223884 3698 ntBASIC5.81□□□□□ -1.48
Nkx3-1P97436 Tmem236-201ENSMUST00000077517 3659 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
Nkx3-1P97436 Obox4-ps28-201ENSMUST00000175654 1362 ntBASIC5.81□□□□□ -1.48
Nkx3-1P97436 Ift80-202ENSMUST00000107812 4063 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
Nkx3-1P97436 Gm42653-201ENSMUST00000200644 2839 ntBASIC5.81□□□□□ -1.48
Nkx3-1P97436 Gm8822-201ENSMUST00000118948 2347 ntBASIC5.81□□□□□ -1.48
Nkx3-1P97436 Gm13219-203ENSMUST00000154223 1843 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
Nkx3-1P97436 Trappc13-203ENSMUST00000141557 3502 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
Nkx3-1P97436 Itch-201ENSMUST00000029126 5159 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
Nkx3-1P97436 Pard3-220ENSMUST00000162456 3204 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
Nkx3-1P97436 Gm15093-201ENSMUST00000179021 2022 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
Nkx3-1P97436 Kat7-202ENSMUST00000092766 3414 ntTSL 5 BASIC5.81□□□□□ -1.48
Nkx3-1P97436 Olfr62-203ENSMUST00000217013 2654 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
Nkx3-1P97436 Zfp37-204ENSMUST00000220873 1985 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
Nkx3-1P97436 Trbv23-201ENSMUST00000103279 344 ntAPPRIS ALT2 BASIC5.81□□□□□ -1.48
Nkx3-1P97436 Ighv1-39-201ENSMUST00000103515 351 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
Nkx3-1P97436 Mup1-203ENSMUST00000107499 797 ntAPPRIS P3 TSL 2 BASIC5.81□□□□□ -1.48
Nkx3-1P97436 Gm14733-201ENSMUST00000117680 133 ntBASIC5.81□□□□□ -1.48
Nkx3-1P97436 Olfr602-ps1-201ENSMUST00000118403 948 ntBASIC5.81□□□□□ -1.48
Nkx3-1P97436 Gm14614-201ENSMUST00000119873 384 ntBASIC5.81□□□□□ -1.48
Nkx3-1P97436 Rpl21-ps9-201ENSMUST00000119897 482 ntBASIC5.81□□□□□ -1.48
Nkx3-1P97436 Gm12518-201ENSMUST00000122075 779 ntBASIC5.81□□□□□ -1.48
Nkx3-1P97436 Gm12152-201ENSMUST00000122465 684 ntBASIC5.81□□□□□ -1.48
Nkx3-1P97436 1700054M17Rik-201ENSMUST00000125654 445 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
Nkx3-1P97436 Gm16157-202ENSMUST00000135564 1082 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms