Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ushbp1Q8R370 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ushbp1Q8R370 Gm8309-201ENSMUST00000206627 1448 ntBASIC20.46■□□□□ 0.87
Ushbp1Q8R370 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ushbp1Q8R370 Gm37856-201ENSMUST00000191634 999 ntBASIC20.46■□□□□ 0.87
Ushbp1Q8R370 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ushbp1Q8R370 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ushbp1Q8R370 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ushbp1Q8R370 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ushbp1Q8R370 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.46■□□□□ 0.87
Ushbp1Q8R370 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ushbp1Q8R370 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ushbp1Q8R370 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC20.45■□□□□ 0.86
Ushbp1Q8R370 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC20.45■□□□□ 0.86
Ushbp1Q8R370 Gm22325-201ENSMUST00000158904 308 ntBASIC20.45■□□□□ 0.86
Ushbp1Q8R370 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ushbp1Q8R370 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Ushbp1Q8R370 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ushbp1Q8R370 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ushbp1Q8R370 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ushbp1Q8R370 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ushbp1Q8R370 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
Ushbp1Q8R370 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Ushbp1Q8R370 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ushbp1Q8R370 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ushbp1Q8R370 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Ushbp1Q8R370 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Ushbp1Q8R370 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ushbp1Q8R370 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Ushbp1Q8R370 Gm37805-201ENSMUST00000192612 1094 ntBASIC20.44■□□□□ 0.86
Ushbp1Q8R370 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.44■□□□□ 0.86
Ushbp1Q8R370 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Ushbp1Q8R370 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ushbp1Q8R370 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ushbp1Q8R370 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ushbp1Q8R370 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ushbp1Q8R370 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ushbp1Q8R370 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ushbp1Q8R370 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ushbp1Q8R370 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Ushbp1Q8R370 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC20.42■□□□□ 0.86
Ushbp1Q8R370 Dapk1-207ENSMUST00000226059 5009 ntBASIC20.42■□□□□ 0.86
Ushbp1Q8R370 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.42■□□□□ 0.86
Ushbp1Q8R370 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC20.42■□□□□ 0.86
Ushbp1Q8R370 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC20.42■□□□□ 0.86
Ushbp1Q8R370 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ushbp1Q8R370 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
Ushbp1Q8R370 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ushbp1Q8R370 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ushbp1Q8R370 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ushbp1Q8R370 AC123834.2-201ENSMUST00000224038 2340 ntBASIC20.41■□□□□ 0.86
Ushbp1Q8R370 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Ushbp1Q8R370 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ushbp1Q8R370 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ushbp1Q8R370 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ushbp1Q8R370 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ushbp1Q8R370 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ushbp1Q8R370 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ushbp1Q8R370 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Ushbp1Q8R370 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Trmt13-210ENSMUST00000198454 880 ntBASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC20.4■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms