Protein–RNA interactions for Protein: Q8C006

Trim35, Tripartite motif-containing protein 35, mousemouse

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim35Q8C006 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim35Q8C006 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim35Q8C006 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim35Q8C006 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Trim35Q8C006 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim35Q8C006 Reep4-203ENSMUST00000226563 1444 ntBASIC18.68■□□□□ 0.58
Trim35Q8C006 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim35Q8C006 Ifna16-201ENSMUST00000105148 1010 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Trim35Q8C006 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC18.68■□□□□ 0.58
Trim35Q8C006 Atp6v1c2-207ENSMUST00000156727 1279 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim35Q8C006 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC18.68■□□□□ 0.58
Trim35Q8C006 Gm19080-201ENSMUST00000196082 550 ntBASIC18.68■□□□□ 0.58
Trim35Q8C006 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim35Q8C006 Gm4265-201ENSMUST00000206701 674 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim35Q8C006 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim35Q8C006 Slx-201ENSMUST00000096913 925 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Trim35Q8C006 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim35Q8C006 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Trim35Q8C006 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim35Q8C006 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim35Q8C006 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim35Q8C006 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim35Q8C006 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim35Q8C006 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim35Q8C006 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim35Q8C006 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim35Q8C006 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim35Q8C006 Gm25026-201ENSMUST00000175017 188 ntBASIC18.67■□□□□ 0.58
Trim35Q8C006 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC18.67■□□□□ 0.58
Trim35Q8C006 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC18.67■□□□□ 0.58
Trim35Q8C006 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim35Q8C006 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC18.67■□□□□ 0.58
Trim35Q8C006 Tcf21-201ENSMUST00000049930 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim35Q8C006 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim35Q8C006 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim35Q8C006 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim35Q8C006 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC18.66■□□□□ 0.58
Trim35Q8C006 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim35Q8C006 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim35Q8C006 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim35Q8C006 Sox5it-201ENSMUST00000144026 1207 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim35Q8C006 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trim35Q8C006 Gm45462-201ENSMUST00000211267 792 ntTSL 5 BASIC18.66■□□□□ 0.58
Trim35Q8C006 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim35Q8C006 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC18.66■□□□□ 0.58
Trim35Q8C006 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trim35Q8C006 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim35Q8C006 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim35Q8C006 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim35Q8C006 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim35Q8C006 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trim35Q8C006 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim35Q8C006 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim35Q8C006 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim35Q8C006 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Trim35Q8C006 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC18.65■□□□□ 0.58
Trim35Q8C006 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim35Q8C006 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Trim35Q8C006 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim35Q8C006 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim35Q8C006 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim35Q8C006 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim35Q8C006 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim35Q8C006 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
Trim35Q8C006 Gm45175-201ENSMUST00000208295 1375 ntTSL 5 BASIC18.65■□□□□ 0.58
Trim35Q8C006 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim35Q8C006 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim35Q8C006 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim35Q8C006 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim35Q8C006 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Trim35Q8C006 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim35Q8C006 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim35Q8C006 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim35Q8C006 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim35Q8C006 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim35Q8C006 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim35Q8C006 Cxcl13-201ENSMUST00000023840 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim35Q8C006 Ly96-201ENSMUST00000026881 632 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim35Q8C006 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim35Q8C006 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC18.64■□□□□ 0.57
Trim35Q8C006 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC18.64■□□□□ 0.57
Trim35Q8C006 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim35Q8C006 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.64■□□□□ 0.57
Trim35Q8C006 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim35Q8C006 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim35Q8C006 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim35Q8C006 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim35Q8C006 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim35Q8C006 Gm13505-201ENSMUST00000121666 817 ntBASIC18.63■□□□□ 0.57
Trim35Q8C006 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Trim35Q8C006 Gm3344-201ENSMUST00000169610 603 ntBASIC18.63■□□□□ 0.57
Trim35Q8C006 Gm29288-201ENSMUST00000191582 901 ntBASIC18.63■□□□□ 0.57
Trim35Q8C006 Acyp1-201ENSMUST00000008966 648 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim35Q8C006 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim35Q8C006 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim35Q8C006 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim35Q8C006 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim35Q8C006 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim35Q8C006 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Trim35Q8C006 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms