Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC17.71■□□□□ 0.42
Col28a1Q2UY11 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Col28a1Q2UY11 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Gm10129-202ENSMUST00000193100 1316 ntBASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col28a1Q2UY11 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col28a1Q2UY11 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col28a1Q2UY11 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Col28a1Q2UY11 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col28a1Q2UY11 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col28a1Q2UY11 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col28a1Q2UY11 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col28a1Q2UY11 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.67■□□□□ 0.42
Col28a1Q2UY11 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC17.67■□□□□ 0.42
Col28a1Q2UY11 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Col28a1Q2UY11 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col28a1Q2UY11 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col28a1Q2UY11 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col28a1Q2UY11 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Smad6-203ENSMUST00000179458 273 ntBASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col28a1Q2UY11 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col28a1Q2UY11 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms