Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Hoxd3P09027 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Hoxd3P09027 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC14.16□□□□□ -0.14
Hoxd3P09027 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Gm8309-201ENSMUST00000206627 1448 ntBASIC14.15□□□□□ -0.14
Hoxd3P09027 Dio3-201ENSMUST00000097228 1449 ntBASIC14.15□□□□□ -0.14
Hoxd3P09027 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
Hoxd3P09027 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC14.15□□□□□ -0.14
Hoxd3P09027 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC14.15□□□□□ -0.14
Hoxd3P09027 Gm43936-201ENSMUST00000203987 490 ntTSL 5 BASIC14.15□□□□□ -0.14
Hoxd3P09027 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Hoxd3P09027 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hoxd3P09027 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Hoxd3P09027 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Hoxd3P09027 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC14.14□□□□□ -0.15
Hoxd3P09027 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Hoxd3P09027 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Hoxd3P09027 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hoxd3P09027 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hoxd3P09027 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Hoxd3P09027 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Hoxd3P09027 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hoxd3P09027 Gm2399-201ENSMUST00000104944 225 ntBASIC14.14□□□□□ -0.15
Hoxd3P09027 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC14.14□□□□□ -0.15
Hoxd3P09027 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC14.14□□□□□ -0.15
Hoxd3P09027 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC14.14□□□□□ -0.15
Hoxd3P09027 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hoxd3P09027 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hoxd3P09027 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Hoxd3P09027 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hoxd3P09027 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hoxd3P09027 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Hoxd3P09027 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hoxd3P09027 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC14.14□□□□□ -0.15
Hoxd3P09027 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Hoxd3P09027 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC14.13□□□□□ -0.15
Hoxd3P09027 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Hoxd3P09027 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hoxd3P09027 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hoxd3P09027 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hoxd3P09027 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hoxd3P09027 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hoxd3P09027 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hoxd3P09027 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Hoxd3P09027 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hoxd3P09027 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Hoxd3P09027 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hoxd3P09027 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Hoxd3P09027 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hoxd3P09027 Gm21596-201ENSMUST00000178049 1316 ntBASIC14.13□□□□□ -0.15
Hoxd3P09027 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hoxd3P09027 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hoxd3P09027 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hoxd3P09027 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Hoxd3P09027 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC14.12□□□□□ -0.15
Hoxd3P09027 Gm15847-201ENSMUST00000121417 1065 ntBASIC14.12□□□□□ -0.15
Hoxd3P09027 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Hoxd3P09027 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Hoxd3P09027 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Hoxd3P09027 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hoxd3P09027 Gm15823-201ENSMUST00000064305 670 ntBASIC14.12□□□□□ -0.15
Hoxd3P09027 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Hoxd3P09027 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Hoxd3P09027 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Hoxd3P09027 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hoxd3P09027 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Hoxd3P09027 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hoxd3P09027 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Hoxd3P09027 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hoxd3P09027 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hoxd3P09027 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Hoxd3P09027 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hoxd3P09027 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hoxd3P09027 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hoxd3P09027 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Hoxd3P09027 Gm22325-201ENSMUST00000158904 308 ntBASIC14.11□□□□□ -0.15
Hoxd3P09027 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Hoxd3P09027 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms