Protein–RNA interactions for Protein: P09022

Hoxa1, Homeobox protein Hox-A1, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa1P09022 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
Hoxa1P09022 AC154231.1-201ENSMUST00000220564 2175 ntBASIC14.9□□□□□ -0.02
Hoxa1P09022 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Hoxa1P09022 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC14.89□□□□□ -0.03
Hoxa1P09022 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC14.89□□□□□ -0.03
Hoxa1P09022 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Hoxa1P09022 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC14.89□□□□□ -0.03
Hoxa1P09022 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC14.89□□□□□ -0.03
Hoxa1P09022 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC14.89□□□□□ -0.03
Hoxa1P09022 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hoxa1P09022 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxa1P09022 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Hoxa1P09022 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxa1P09022 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Hoxa1P09022 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Hoxa1P09022 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxa1P09022 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Hoxa1P09022 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Hoxa1P09022 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxa1P09022 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxa1P09022 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxa1P09022 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxa1P09022 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC14.88□□□□□ -0.03
Hoxa1P09022 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC14.88□□□□□ -0.03
Hoxa1P09022 Gm21168-201ENSMUST00000199646 1096 ntBASIC14.88□□□□□ -0.03
Hoxa1P09022 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxa1P09022 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Hoxa1P09022 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxa1P09022 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC14.88□□□□□ -0.03
Hoxa1P09022 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Hoxa1P09022 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxa1P09022 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Hoxa1P09022 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC14.88□□□□□ -0.03
Hoxa1P09022 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxa1P09022 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxa1P09022 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxa1P09022 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxa1P09022 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Hoxa1P09022 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC14.87□□□□□ -0.03
Hoxa1P09022 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC14.87□□□□□ -0.03
Hoxa1P09022 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Hoxa1P09022 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Hoxa1P09022 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxa1P09022 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxa1P09022 Grk6-206ENSMUST00000224995 2971 ntBASIC14.86□□□□□ -0.03
Hoxa1P09022 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Hoxa1P09022 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxa1P09022 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxa1P09022 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxa1P09022 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxa1P09022 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxa1P09022 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxa1P09022 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxa1P09022 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxa1P09022 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxa1P09022 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC14.86□□□□□ -0.03
Hoxa1P09022 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxa1P09022 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Hoxa1P09022 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxa1P09022 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxa1P09022 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxa1P09022 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxa1P09022 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxa1P09022 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Hoxa1P09022 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Hoxa1P09022 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxa1P09022 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms