Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
Col3a1P08121 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col3a1P08121 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC21.95■■□□□ 1.1
Col3a1P08121 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col3a1P08121 Gm11643-201ENSMUST00000119578 864 ntBASIC21.95■■□□□ 1.1
Col3a1P08121 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC21.95■■□□□ 1.1
Col3a1P08121 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
Col3a1P08121 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col3a1P08121 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col3a1P08121 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col3a1P08121 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col3a1P08121 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.94■■□□□ 1.1
Col3a1P08121 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC21.94■■□□□ 1.1
Col3a1P08121 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC21.94■■□□□ 1.1
Col3a1P08121 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Col3a1P08121 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col3a1P08121 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Col3a1P08121 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col3a1P08121 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col3a1P08121 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Col3a1P08121 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col3a1P08121 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col3a1P08121 AC166341.7-201ENSMUST00000221698 126 ntBASIC21.93■■□□□ 1.1
Col3a1P08121 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col3a1P08121 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC21.93■■□□□ 1.1
Col3a1P08121 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Col3a1P08121 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Col3a1P08121 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC21.93■■□□□ 1.1
Col3a1P08121 AC124581.1-201ENSMUST00000225416 1399 ntBASIC21.92■■□□□ 1.1
Col3a1P08121 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col3a1P08121 Gm12382-201ENSMUST00000122005 922 ntBASIC21.92■■□□□ 1.1
Col3a1P08121 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC21.92■■□□□ 1.1
Col3a1P08121 Gm20472-201ENSMUST00000174403 1240 ntBASIC21.92■■□□□ 1.1
Col3a1P08121 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC21.92■■□□□ 1.1
Col3a1P08121 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col3a1P08121 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col3a1P08121 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col3a1P08121 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col3a1P08121 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col3a1P08121 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Col3a1P08121 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Col3a1P08121 Odf3b-204ENSMUST00000227834 930 ntBASIC21.91■■□□□ 1.1
Col3a1P08121 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Col3a1P08121 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Col3a1P08121 AC121961.1-201ENSMUST00000218594 1779 ntBASIC21.91■■□□□ 1.1
Col3a1P08121 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Col3a1P08121 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Col3a1P08121 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Col3a1P08121 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Col3a1P08121 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Col3a1P08121 Gm43231-201ENSMUST00000202960 2258 ntBASIC21.91■■□□□ 1.1
Col3a1P08121 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col3a1P08121 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col3a1P08121 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col3a1P08121 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col3a1P08121 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col3a1P08121 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Col3a1P08121 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
Col3a1P08121 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC21.9■■□□□ 1.1
Col3a1P08121 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col3a1P08121 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col3a1P08121 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col3a1P08121 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
Col3a1P08121 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col3a1P08121 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col3a1P08121 Iqck-206ENSMUST00000208658 2891 ntBASIC21.9■■□□□ 1.1
Col3a1P08121 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Col3a1P08121 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC21.9■■□□□ 1.1
Col3a1P08121 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
Col3a1P08121 Gm3375-201ENSMUST00000203929 796 ntBASIC21.9■■□□□ 1.1
Col3a1P08121 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Col3a1P08121 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col3a1P08121 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Col3a1P08121 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC21.89■■□□□ 1.1
Col3a1P08121 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Col3a1P08121 Arhgef4-208ENSMUST00000211073 171 ntBASIC21.89■■□□□ 1.09
Col3a1P08121 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Col3a1P08121 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Col3a1P08121 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Col3a1P08121 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Col3a1P08121 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Col3a1P08121 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
Col3a1P08121 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Col3a1P08121 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
Col3a1P08121 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col3a1P08121 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col3a1P08121 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col3a1P08121 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col3a1P08121 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col3a1P08121 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC21.87■■□□□ 1.09
Col3a1P08121 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col3a1P08121 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col3a1P08121 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col3a1P08121 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col3a1P08121 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
Col3a1P08121 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col3a1P08121 Gm38308-201ENSMUST00000194934 1809 ntBASIC21.86■■□□□ 1.09
Col3a1P08121 Gm5417-201ENSMUST00000079706 384 ntBASIC21.86■■□□□ 1.09
Col3a1P08121 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col3a1P08121 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms