Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
VPS4BO75351 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4BO75351 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
VPS4BO75351 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS4BO75351 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
VPS4BO75351 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS4BO75351 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS4BO75351 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS4BO75351 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
VPS4BO75351 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS4BO75351 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS4BO75351 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS4BO75351 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.38■□□□□ 0.85
VPS4BO75351 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS4BO75351 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS4BO75351 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
VPS4BO75351 AL157384.1-201ENST00000445995 2473 ntBASIC20.38■□□□□ 0.85
VPS4BO75351 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS4BO75351 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
VPS4BO75351 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS4BO75351 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS4BO75351 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS4BO75351 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS4BO75351 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
VPS4BO75351 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS4BO75351 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS4BO75351 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
VPS4BO75351 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
VPS4BO75351 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS4BO75351 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS4BO75351 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS4BO75351 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS4BO75351 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
VPS4BO75351 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
VPS4BO75351 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS4BO75351 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS4BO75351 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS4BO75351 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS4BO75351 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
VPS4BO75351 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS4BO75351 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS4BO75351 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
VPS4BO75351 LINC02228-203ENST00000641970 1355 ntBASIC20.36■□□□□ 0.85
VPS4BO75351 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS4BO75351 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS4BO75351 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS4BO75351 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.36■□□□□ 0.85
VPS4BO75351 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
VPS4BO75351 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS4BO75351 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS4BO75351 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS4BO75351 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS4BO75351 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS4BO75351 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS4BO75351 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS4BO75351 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS4BO75351 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS4BO75351 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS4BO75351 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS4BO75351 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS4BO75351 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS4BO75351 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS4BO75351 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS4BO75351 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS4BO75351 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
VPS4BO75351 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS4BO75351 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS4BO75351 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS4BO75351 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.35■□□□□ 0.85
VPS4BO75351 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS4BO75351 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS4BO75351 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
VPS4BO75351 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS4BO75351 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS4BO75351 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.35■□□□□ 0.85
VPS4BO75351 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS4BO75351 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS4BO75351 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS4BO75351 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS4BO75351 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS4BO75351 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
VPS4BO75351 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS4BO75351 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
VPS4BO75351 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS4BO75351 FEM1AP1-201ENST00000431297 1995 ntBASIC20.35■□□□□ 0.85
VPS4BO75351 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS4BO75351 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS4BO75351 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS4BO75351 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS4BO75351 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
VPS4BO75351 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS4BO75351 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.34■□□□□ 0.85
VPS4BO75351 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS4BO75351 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS4BO75351 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS4BO75351 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
VPS4BO75351 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.34■□□□□ 0.85
VPS4BO75351 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
VPS4BO75351 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS4BO75351 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms