Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Chd3B1AR17 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC17.92■□□□□ 0.46
Chd3B1AR17 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
Chd3B1AR17 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Chd3B1AR17 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC17.92■□□□□ 0.46
Chd3B1AR17 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Chd3B1AR17 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Chd3B1AR17 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC17.92■□□□□ 0.46
Chd3B1AR17 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Chd3B1AR17 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Chd3B1AR17 Flg-201ENSMUST00000050758 1488 ntBASIC17.92■□□□□ 0.46
Chd3B1AR17 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Chd3B1AR17 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Chd3B1AR17 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Chd3B1AR17 Gm29241-201ENSMUST00000189260 1096 ntBASIC17.92■□□□□ 0.46
Chd3B1AR17 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Chd3B1AR17 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Chd3B1AR17 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chd3B1AR17 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
Chd3B1AR17 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chd3B1AR17 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chd3B1AR17 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Chd3B1AR17 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
Chd3B1AR17 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Chd3B1AR17 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Chd3B1AR17 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chd3B1AR17 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Chd3B1AR17 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC17.91■□□□□ 0.46
Chd3B1AR17 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chd3B1AR17 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chd3B1AR17 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC17.91■□□□□ 0.46
Chd3B1AR17 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Chd3B1AR17 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chd3B1AR17 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
Chd3B1AR17 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chd3B1AR17 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Chd3B1AR17 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chd3B1AR17 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chd3B1AR17 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Chd3B1AR17 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chd3B1AR17 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
Chd3B1AR17 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chd3B1AR17 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chd3B1AR17 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Chd3B1AR17 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chd3B1AR17 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chd3B1AR17 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chd3B1AR17 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC17.89■□□□□ 0.45
Chd3B1AR17 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chd3B1AR17 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chd3B1AR17 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Chd3B1AR17 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chd3B1AR17 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chd3B1AR17 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chd3B1AR17 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chd3B1AR17 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chd3B1AR17 Gm9194-201ENSMUST00000220749 1447 ntBASIC17.88■□□□□ 0.45
Chd3B1AR17 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Chd3B1AR17 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC17.88■□□□□ 0.45
Chd3B1AR17 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Chd3B1AR17 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Chd3B1AR17 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Chd3B1AR17 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Chd3B1AR17 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Chd3B1AR17 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Chd3B1AR17 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.87■□□□□ 0.45
Chd3B1AR17 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 AC154649.1-201ENSMUST00000227392 384 ntBASIC17.87■□□□□ 0.45
Chd3B1AR17 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC17.87■□□□□ 0.45
Chd3B1AR17 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
Chd3B1AR17 Mir7071-201ENSMUST00000184847 69 ntBASIC17.87■□□□□ 0.45
Chd3B1AR17 Gm16042-201ENSMUST00000204813 1247 ntBASIC17.87■□□□□ 0.45
Chd3B1AR17 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chd3B1AR17 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.87■□□□□ 0.45
Chd3B1AR17 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Chd3B1AR17 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Chd3B1AR17 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Chd3B1AR17 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Chd3B1AR17 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC17.86■□□□□ 0.45
Chd3B1AR17 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Chd3B1AR17 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Chd3B1AR17 Mir5122-201ENSMUST00000175004 89 ntBASIC17.86■□□□□ 0.45
Chd3B1AR17 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Chd3B1AR17 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC17.86■□□□□ 0.45
Chd3B1AR17 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Chd3B1AR17 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms