Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trbv1A0A0B4J1G7 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trbv1A0A0B4J1G7 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trbv1A0A0B4J1G7 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trbv1A0A0B4J1G7 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trbv1A0A0B4J1G7 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trbv1A0A0B4J1G7 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Trbv1A0A0B4J1G7 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trbv1A0A0B4J1G7 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Wdr70-203ENSMUST00000227371 1130 ntBASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Gm10571-201ENSMUST00000097869 1638 ntBASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trbv1A0A0B4J1G7 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Gm8493-201ENSMUST00000196881 489 ntBASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trbv1A0A0B4J1G7 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Zcchc6-207ENSMUST00000225576 2499 ntBASIC14.3□□□□□ -0.12
Trbv1A0A0B4J1G7 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 Gm45412-201ENSMUST00000210217 2275 ntBASIC14.29□□□□□ -0.12
Trbv1A0A0B4J1G7 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms