Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm28919-201ENSMUST00000190026 920 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Col18a1P39061 Gm21861-202ENSMUST00000190806 931 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Col18a1P39061 Gm20819-201ENSMUST00000191091 925 ntBASIC9.03□□□□□ -0.96
Col18a1P39061 Gm20871-201ENSMUST00000191322 931 ntBASIC9.03□□□□□ -0.96
Col18a1P39061 Gm21865-202ENSMUST00000191443 923 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Col18a1P39061 Gm36935-201ENSMUST00000192526 292 ntBASIC9.03□□□□□ -0.96
Col18a1P39061 Gm30737-201ENSMUST00000192683 923 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Col18a1P39061 4930590H14Rik-201ENSMUST00000193999 551 ntBASIC9.03□□□□□ -0.96
Col18a1P39061 Gm35134-201ENSMUST00000194086 923 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Col18a1P39061 Gm5853-201ENSMUST00000197183 632 ntBASIC9.03□□□□□ -0.96
Col18a1P39061 Gm42504-201ENSMUST00000198312 525 ntTSL 3 BASIC9.03□□□□□ -0.96
Col18a1P39061 Gm36548-202ENSMUST00000200222 494 ntTSL 5 BASIC9.03□□□□□ -0.96
Col18a1P39061 Gm5110-201ENSMUST00000203122 1063 ntBASIC9.03□□□□□ -0.96
Col18a1P39061 Gm45127-201ENSMUST00000205984 1015 ntBASIC9.03□□□□□ -0.96
Col18a1P39061 AC192333.6-201ENSMUST00000224565 725 ntBASIC9.03□□□□□ -0.96
Col18a1P39061 AC147628.1-201ENSMUST00000228193 688 ntBASIC9.03□□□□□ -0.96
Col18a1P39061 Arhgdib-201ENSMUST00000032344 1193 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Col18a1P39061 Stxbp3-ps-201ENSMUST00000090527 758 ntBASIC9.03□□□□□ -0.96
Col18a1P39061 H60c-201ENSMUST00000170893 2817 ntAPPRIS P2 TSL 1 (best) BASIC9.03□□□□□ -0.96
Col18a1P39061 Prkrip1-204ENSMUST00000151786 3893 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Col18a1P39061 Accs-203ENSMUST00000111246 3950 ntAPPRIS ALT2 TSL 1 (best) BASIC9.03□□□□□ -0.96
Col18a1P39061 Tec-203ENSMUST00000113594 2580 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Col18a1P39061 Sema6d-205ENSMUST00000103238 3165 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Col18a1P39061 Ttc37-201ENSMUST00000091466 5381 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
Col18a1P39061 Zfp599-201ENSMUST00000086281 3574 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Col18a1P39061 4932415M13Rik-202ENSMUST00000184645 3063 ntTSL 2 BASIC9.02□□□□□ -0.96
Col18a1P39061 Olfr452-203ENSMUST00000215719 2728 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.96
Col18a1P39061 Grik1-202ENSMUST00000072256 3655 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
Col18a1P39061 Ndst3-206ENSMUST00000154668 5570 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.96
Col18a1P39061 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.96
Col18a1P39061 Gm12043-201ENSMUST00000131570 2788 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
Col18a1P39061 Inhbe-201ENSMUST00000059718 5319 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Col18a1P39061 Dsg1b-201ENSMUST00000076737 3965 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Col18a1P39061 Gm37951-201ENSMUST00000192963 3032 ntBASIC9.02□□□□□ -0.97
Col18a1P39061 Trav6-1-201ENSMUST00000103571 338 ntAPPRIS P1 BASIC9.02□□□□□ -0.97
Col18a1P39061 4933406K04Rik-202ENSMUST00000124363 1064 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Col18a1P39061 Scarna6-201ENSMUST00000158656 265 ntBASIC9.02□□□□□ -0.97
Col18a1P39061 Gm19840-201ENSMUST00000169624 882 ntBASIC9.02□□□□□ -0.97
Col18a1P39061 Ank3-208ENSMUST00000182029 3825 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Col18a1P39061 4930440C22Rik-202ENSMUST00000190754 512 ntTSL 3 BASIC9.02□□□□□ -0.97
Col18a1P39061 Gm8009-201ENSMUST00000191672 436 ntBASIC9.02□□□□□ -0.97
Col18a1P39061 Ighv5-19-201ENSMUST00000193466 297 ntBASIC9.02□□□□□ -0.97
Col18a1P39061 Gm45425-201ENSMUST00000211727 618 ntTSL 2 BASIC9.02□□□□□ -0.97
Col18a1P39061 Sult3a1-202ENSMUST00000218204 1154 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Col18a1P39061 Gm18387-201ENSMUST00000220333 702 ntBASIC9.02□□□□□ -0.97
Col18a1P39061 Gm36501-201ENSMUST00000221857 745 ntBASIC9.02□□□□□ -0.97
Col18a1P39061 Glt6d1-201ENSMUST00000038010 1211 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Col18a1P39061 Olfr1152-201ENSMUST00000051058 933 ntAPPRIS P1 BASIC9.02□□□□□ -0.97
Col18a1P39061 Olfr1441-201ENSMUST00000059033 1088 ntAPPRIS P1 BASIC9.02□□□□□ -0.97
Col18a1P39061 Sult3a1-201ENSMUST00000092597 1047 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
Col18a1P39061 Clasp2-201ENSMUST00000111838 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
Col18a1P39061 Gm12051-201ENSMUST00000147771 1341 ntTSL 5 BASIC9.02□□□□□ -0.97
Col18a1P39061 Obox7-201ENSMUST00000069740 1306 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Col18a1P39061 Dio2-201ENSMUST00000082432 5815 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Col18a1P39061 Med23-201ENSMUST00000020159 4798 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Col18a1P39061 Gm45903-201ENSMUST00000212891 2898 ntTSL 5 BASIC9.02□□□□□ -0.97
Col18a1P39061 Gm44121-201ENSMUST00000205169 2006 ntBASIC9.02□□□□□ -0.97
Col18a1P39061 Ctnnd1-223ENSMUST00000111697 5294 ntTSL 5 BASIC9.02□□□□□ -0.97
Col18a1P39061 Brox-202ENSMUST00000163528 3413 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Col18a1P39061 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Col18a1P39061 Rpl23a-ps2-201ENSMUST00000119375 474 ntBASIC9.01□□□□□ -0.97
Col18a1P39061 Gm11820-201ENSMUST00000139614 664 ntTSL 3 BASIC9.01□□□□□ -0.97
Col18a1P39061 Igkv19-93-201ENSMUST00000183936 344 ntAPPRIS ALT2 BASIC9.01□□□□□ -0.97
Col18a1P39061 Gm18849-201ENSMUST00000189861 560 ntBASIC9.01□□□□□ -0.97
Col18a1P39061 Csn2-202ENSMUST00000196163 722 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
Col18a1P39061 Gm44738-201ENSMUST00000206393 371 ntTSL 2 BASIC9.01□□□□□ -0.97
Col18a1P39061 Gm39336-201ENSMUST00000214933 260 ntTSL 3 BASIC9.01□□□□□ -0.97
Col18a1P39061 Gm7570-201ENSMUST00000215246 698 ntBASIC9.01□□□□□ -0.97
Col18a1P39061 AC156572.1-201ENSMUST00000221040 1161 ntTSL 5 BASIC9.01□□□□□ -0.97
Col18a1P39061 Gm16335-201ENSMUST00000077495 309 ntBASIC9.01□□□□□ -0.97
Col18a1P39061 Cryba1-201ENSMUST00000078623 778 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 Rpl35a-ps7-201ENSMUST00000080603 333 ntBASIC9.01□□□□□ -0.97
Col18a1P39061 Gm7676-201ENSMUST00000084055 319 ntBASIC9.01□□□□□ -0.97
Col18a1P39061 Plekhg1-202ENSMUST00000120274 7369 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
Col18a1P39061 Afm-202ENSMUST00000128740 2465 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 Fndc1-202ENSMUST00000097425 5845 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
Col18a1P39061 Orc3-202ENSMUST00000108142 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 Zfp266-201ENSMUST00000068296 2266 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 Robo4-202ENSMUST00000115046 3878 ntAPPRIS ALT2 TSL 2 BASIC9.01□□□□□ -0.97
Col18a1P39061 Olfr1171-ps1-202ENSMUST00000150178 1398 ntTSL 3 BASIC9.01□□□□□ -0.97
Col18a1P39061 7420700N18Rik-201ENSMUST00000209524 1644 ntTSL 5 BASIC9.01□□□□□ -0.97
Col18a1P39061 Znfx1-202ENSMUST00000067584 4147 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 Mcf2l-205ENSMUST00000110871 3401 ntTSL 5 BASIC9.01□□□□□ -0.97
Col18a1P39061 Gm37310-201ENSMUST00000195237 2968 ntBASIC9.01□□□□□ -0.97
Col18a1P39061 Cdhr3-201ENSMUST00000095774 2953 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 4930503L19Rik-207ENSMUST00000212982 1415 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 Efna5-201ENSMUST00000076840 4032 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 Gm33280-201ENSMUST00000193983 4340 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 Gcnt2-202ENSMUST00000069958 3929 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 Gm26684-202ENSMUST00000228229 8257 ntBASIC9.01□□□□□ -0.97
Col18a1P39061 Cacna1c-204ENSMUST00000112793 6669 ntAPPRIS P4 TSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 Cacna1c-208ENSMUST00000187317 6663 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
Col18a1P39061 Sycp1-201ENSMUST00000029448 3437 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 Rgs4-201ENSMUST00000027991 2941 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 Ssxb10-201ENSMUST00000103003 879 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 Trav6-6-201ENSMUST00000103584 344 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
Col18a1P39061 Trav6n-5-201ENSMUST00000103611 338 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
Col18a1P39061 Tbata-207ENSMUST00000140456 953 ntTSL 5 BASIC9.01□□□□□ -0.97
Col18a1P39061 Tbata-208ENSMUST00000143207 982 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Col18a1P39061 Gm23408-201ENSMUST00000158523 265 ntBASIC9.01□□□□□ -0.97
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms