Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm11541-201ENSMUST00000069852 1681 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Skiv2l2-201ENSMUST00000022281 3689 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Ppp3cc-203ENSMUST00000228911 1836 ntAPPRIS ALT2 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Fbxw10-203ENSMUST00000150989 3267 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm45221-201ENSMUST00000207822 2272 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Il1f9-201ENSMUST00000057567 1648 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Arhgap12-208ENSMUST00000182213 4162 ntAPPRIS ALT1 TSL 5 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 F830045P16Rik-201ENSMUST00000050309 1925 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Olfr316-202ENSMUST00000215071 2719 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 AC164623.1-201ENSMUST00000217947 2709 ntTSL 5 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Olfr446-201ENSMUST00000101461 927 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm14116-201ENSMUST00000117733 805 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Speer4d-202ENSMUST00000119100 857 ntTSL 2 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Fabp12-203ENSMUST00000119761 548 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm14070-201ENSMUST00000120773 428 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm6451-201ENSMUST00000121488 717 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm12451-201ENSMUST00000121636 633 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm12540-201ENSMUST00000121938 319 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm15407-201ENSMUST00000136919 634 ntTSL 3 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm13963-201ENSMUST00000143525 892 ntTSL 3 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm12227-201ENSMUST00000147847 563 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm23756-201ENSMUST00000157582 114 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm26353-201ENSMUST00000158224 255 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm18808-201ENSMUST00000173316 462 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm22990-201ENSMUST00000175427 89 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm5871-201ENSMUST00000176461 718 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Mir7046-201ENSMUST00000183435 66 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Ly6e-206ENSMUST00000187284 654 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm29141-201ENSMUST00000190357 882 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Trav13n-1-201ENSMUST00000198359 331 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Olfr726-202ENSMUST00000206834 1256 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 CT030657.2-201ENSMUST00000220710 792 ntTSL 5 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 AC152394.1-201ENSMUST00000227360 1086 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Snora21-201ENSMUST00000082967 137 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 n-R5s217-201ENSMUST00000083341 116 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm10354-201ENSMUST00000096953 1215 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Tcf12-221ENSMUST00000185117 3986 ntAPPRIS ALT1 TSL 5 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Golph3l-202ENSMUST00000098861 2221 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Bdnf-201ENSMUST00000053317 4266 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Usp17lb-201ENSMUST00000076501 1407 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gm38811-201ENSMUST00000203781 3478 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Crtam-202ENSMUST00000180384 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 A830010M20Rik-203ENSMUST00000100951 4545 ntTSL 5 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Oxsm-203ENSMUST00000112625 3434 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Olfr1198-203ENSMUST00000215529 3413 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Enpep-201ENSMUST00000029658 4181 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Pum2-216ENSMUST00000178015 5874 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Tdrkh-201ENSMUST00000045245 2642 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Masp1-201ENSMUST00000089883 2752 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Gimap9-201ENSMUST00000054050 1384 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Kcnj15-202ENSMUST00000113854 4409 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 AC162301.1-201ENSMUST00000228785 1542 ntBASIC6.04□□□□□ -1.44
Nkx3-1P97436 Skil-202ENSMUST00000117728 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
Nkx3-1P97436 Ptprz1-204ENSMUST00000202102 4947 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Nr2c1-203ENSMUST00000105290 3732 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Phactr2-204ENSMUST00000105546 2808 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Ugt1a6b-201ENSMUST00000113137 2249 ntAPPRIS P1 TSL 3 BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Zfp113-204ENSMUST00000165640 1320 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 AC132465.1-201ENSMUST00000219938 1307 ntBASIC6.03□□□□□ -1.44
Nkx3-1P97436 Ccdc158-201ENSMUST00000060930 3676 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Ide-201ENSMUST00000131070 4962 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Gm31410-201ENSMUST00000217302 4048 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Gm38244-201ENSMUST00000191737 2586 ntBASIC6.03□□□□□ -1.44
Nkx3-1P97436 Kcnu1-202ENSMUST00000120653 1446 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Gm13141-201ENSMUST00000117417 456 ntBASIC6.03□□□□□ -1.44
Nkx3-1P97436 Gm12369-201ENSMUST00000121343 942 ntBASIC6.03□□□□□ -1.44
Nkx3-1P97436 4930527B05Rik-201ENSMUST00000141593 602 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Pde1c-207ENSMUST00000168944 2126 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Gm21761-201ENSMUST00000179502 516 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Gm5345-201ENSMUST00000183076 1014 ntBASIC6.03□□□□□ -1.44
Nkx3-1P97436 Gm8883-201ENSMUST00000187594 454 ntTSL 3 BASIC6.03□□□□□ -1.44
Nkx3-1P97436 4930572K03Rik-201ENSMUST00000196713 931 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Gm34368-201ENSMUST00000209512 1111 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Gm8058-201ENSMUST00000217247 587 ntBASIC6.03□□□□□ -1.44
Nkx3-1P97436 Smim15-203ENSMUST00000224361 830 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Cldn34b2-201ENSMUST00000076671 1077 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Vmn1r204-201ENSMUST00000091728 909 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Bglap2-201ENSMUST00000098956 471 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Gm45601-201ENSMUST00000211483 6753 ntTSL 5 BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Triqk-203ENSMUST00000183345 3545 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Gm14147-201ENSMUST00000109888 2681 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Gm14151-201ENSMUST00000109890 2672 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
Nkx3-1P97436 5031434C07Rik-202ENSMUST00000188014 3244 ntBASIC6.03□□□□□ -1.44
Nkx3-1P97436 Zim3-202ENSMUST00000203365 3226 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Ccdc83-203ENSMUST00000107221 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Mylk3-203ENSMUST00000122452 3036 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 4632404H12Rik-202ENSMUST00000195940 4671 ntBASIC6.03□□□□□ -1.44
Nkx3-1P97436 AC129308.1-201ENSMUST00000223800 2309 ntBASIC6.03□□□□□ -1.44
Nkx3-1P97436 Psmf1-201ENSMUST00000042452 3809 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Lix1-201ENSMUST00000115576 3116 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Cphx1-204ENSMUST00000184016 1649 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 E230015B07Rik-202ENSMUST00000159884 2822 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Nkx3-1P97436 Clcn7-204ENSMUST00000160961 3983 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
Nkx3-1P97436 Atp13a4-208ENSMUST00000182627 4238 ntAPPRIS P3 TSL 5 BASIC6.02□□□□□ -1.45
Nkx3-1P97436 Selp-205ENSMUST00000162746 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
Nkx3-1P97436 Vmn1r220-203ENSMUST00000227679 7868 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
Nkx3-1P97436 Vmn1r220-206ENSMUST00000228854 7854 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
Nkx3-1P97436 Tph1-201ENSMUST00000049298 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
Nkx3-1P97436 Olfr1440-202ENSMUST00000213657 7588 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
Nkx3-1P97436 Scd1-201ENSMUST00000041331 4836 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
Retrieved 100 of 76,532 protein–RNA pairs in 111 ms