Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Syne4Q8CII8 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Syne4Q8CII8 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Syne4Q8CII8 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Syne4Q8CII8 Mir6349-201ENSMUST00000184059 97 ntBASIC20.84■□□□□ 0.93
Syne4Q8CII8 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Syne4Q8CII8 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Syne4Q8CII8 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC20.83■□□□□ 0.93
Syne4Q8CII8 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Syne4Q8CII8 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Syne4Q8CII8 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Syne4Q8CII8 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Syne4Q8CII8 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Syne4Q8CII8 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Syne4Q8CII8 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC20.83■□□□□ 0.93
Syne4Q8CII8 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Syne4Q8CII8 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Syne4Q8CII8 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
Syne4Q8CII8 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Syne4Q8CII8 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Syne4Q8CII8 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Syne4Q8CII8 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Syne4Q8CII8 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC20.82■□□□□ 0.92
Syne4Q8CII8 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Syne4Q8CII8 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Syne4Q8CII8 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Syne4Q8CII8 Gm6728-201ENSMUST00000178117 1065 ntBASIC20.82■□□□□ 0.92
Syne4Q8CII8 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Syne4Q8CII8 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Syne4Q8CII8 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Syne4Q8CII8 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Syne4Q8CII8 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Syne4Q8CII8 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Syne4Q8CII8 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Syne4Q8CII8 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Syne4Q8CII8 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Syne4Q8CII8 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Syne4Q8CII8 AC166341.7-201ENSMUST00000221698 126 ntBASIC20.81■□□□□ 0.92
Syne4Q8CII8 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Syne4Q8CII8 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Syne4Q8CII8 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Syne4Q8CII8 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.81■□□□□ 0.92
Syne4Q8CII8 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
Syne4Q8CII8 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC20.8■□□□□ 0.92
Syne4Q8CII8 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Syne4Q8CII8 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC20.8■□□□□ 0.92
Syne4Q8CII8 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Syne4Q8CII8 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Syne4Q8CII8 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Syne4Q8CII8 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Syne4Q8CII8 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Syne4Q8CII8 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Syne4Q8CII8 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Syne4Q8CII8 Gm18959-201ENSMUST00000208954 655 ntBASIC20.79■□□□□ 0.92
Syne4Q8CII8 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC20.79■□□□□ 0.92
Syne4Q8CII8 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Syne4Q8CII8 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC20.79■□□□□ 0.92
Syne4Q8CII8 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.79■□□□□ 0.92
Syne4Q8CII8 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
Syne4Q8CII8 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne4Q8CII8 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne4Q8CII8 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne4Q8CII8 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne4Q8CII8 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne4Q8CII8 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC20.78■□□□□ 0.92
Syne4Q8CII8 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Syne4Q8CII8 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC20.78■□□□□ 0.92
Syne4Q8CII8 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Syne4Q8CII8 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC20.78■□□□□ 0.92
Syne4Q8CII8 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne4Q8CII8 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne4Q8CII8 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne4Q8CII8 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
Syne4Q8CII8 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Syne4Q8CII8 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Syne4Q8CII8 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Syne4Q8CII8 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Syne4Q8CII8 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Syne4Q8CII8 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Syne4Q8CII8 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Syne4Q8CII8 Gm23634-201ENSMUST00000175071 91 ntBASIC20.77■□□□□ 0.92
Syne4Q8CII8 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC20.77■□□□□ 0.92
Syne4Q8CII8 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Syne4Q8CII8 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Syne4Q8CII8 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Syne4Q8CII8 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Syne4Q8CII8 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Syne4Q8CII8 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Syne4Q8CII8 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Syne4Q8CII8 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Syne4Q8CII8 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Syne4Q8CII8 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Syne4Q8CII8 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC20.76■□□□□ 0.91
Syne4Q8CII8 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Syne4Q8CII8 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC20.76■□□□□ 0.91
Syne4Q8CII8 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Syne4Q8CII8 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Syne4Q8CII8 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Syne4Q8CII8 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Syne4Q8CII8 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms