Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Vps53Q8CCB4 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Vps53Q8CCB4 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC21.33■■□□□ 1
Vps53Q8CCB4 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC21.33■■□□□ 1
Vps53Q8CCB4 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Vps53Q8CCB4 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Vps53Q8CCB4 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Vps53Q8CCB4 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC21.32■■□□□ 1
Vps53Q8CCB4 Gm10252-201ENSMUST00000209541 832 ntBASIC21.32■■□□□ 1
Vps53Q8CCB4 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Vps53Q8CCB4 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Vps53Q8CCB4 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Vps53Q8CCB4 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC21.32■■□□□ 1
Vps53Q8CCB4 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC21.31■■□□□ 1
Vps53Q8CCB4 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC21.31■■□□□ 1
Vps53Q8CCB4 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
Vps53Q8CCB4 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vps53Q8CCB4 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC21.31■■□□□ 1
Vps53Q8CCB4 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Vps53Q8CCB4 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vps53Q8CCB4 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC21.3■■□□□ 1
Vps53Q8CCB4 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vps53Q8CCB4 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC21.3■■□□□ 1
Vps53Q8CCB4 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vps53Q8CCB4 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vps53Q8CCB4 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vps53Q8CCB4 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC21.3■■□□□ 1
Vps53Q8CCB4 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vps53Q8CCB4 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vps53Q8CCB4 Gm9885-202ENSMUST00000186234 2209 ntBASIC21.3■■□□□ 1
Vps53Q8CCB4 Gm10655-201ENSMUST00000098658 1397 ntBASIC21.3■■□□□ 1
Vps53Q8CCB4 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC21.3■■□□□ 1
Vps53Q8CCB4 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vps53Q8CCB4 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Vps53Q8CCB4 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC21.29■■□□□ 1
Vps53Q8CCB4 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vps53Q8CCB4 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC21.29■■□□□ 1
Vps53Q8CCB4 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vps53Q8CCB4 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC21.29■■□□□ 1
Vps53Q8CCB4 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC21.29■■□□□ 1
Vps53Q8CCB4 Gm20049-201ENSMUST00000219950 730 ntBASIC21.29■■□□□ 1
Vps53Q8CCB4 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC21.29■■□□□ 1
Vps53Q8CCB4 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vps53Q8CCB4 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vps53Q8CCB4 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Vps53Q8CCB4 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vps53Q8CCB4 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Vps53Q8CCB4 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC21.29■■□□□ 1
Vps53Q8CCB4 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Vps53Q8CCB4 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Vps53Q8CCB4 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Vps53Q8CCB4 Gm13168-201ENSMUST00000121771 632 ntBASIC21.28■■□□□ 1
Vps53Q8CCB4 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Vps53Q8CCB4 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Vps53Q8CCB4 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Vps53Q8CCB4 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Vps53Q8CCB4 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Vps53Q8CCB4 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Vps53Q8CCB4 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Vps53Q8CCB4 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Vps53Q8CCB4 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Vps53Q8CCB4 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC21.27■■□□□ 1
Vps53Q8CCB4 Gm13534-201ENSMUST00000121169 513 ntBASIC21.27■■□□□ 1
Vps53Q8CCB4 Gm6211-202ENSMUST00000167849 925 ntBASIC21.27■■□□□ 1
Vps53Q8CCB4 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC21.27■■□□□ 1
Vps53Q8CCB4 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Vps53Q8CCB4 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC21.27■■□□□ 1
Vps53Q8CCB4 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC21.27■■□□□ 1
Vps53Q8CCB4 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Vps53Q8CCB4 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Vps53Q8CCB4 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC21.27■□□□□ 0.99
Vps53Q8CCB4 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Vps53Q8CCB4 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps53Q8CCB4 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps53Q8CCB4 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps53Q8CCB4 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps53Q8CCB4 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Vps53Q8CCB4 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Vps53Q8CCB4 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Vps53Q8CCB4 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps53Q8CCB4 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps53Q8CCB4 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps53Q8CCB4 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Vps53Q8CCB4 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps53Q8CCB4 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC21.26■□□□□ 0.99
Vps53Q8CCB4 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms