Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim47Q8C0E3 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC20.34■□□□□ 0.85
Trim47Q8C0E3 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim47Q8C0E3 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim47Q8C0E3 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim47Q8C0E3 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim47Q8C0E3 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim47Q8C0E3 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Trim47Q8C0E3 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC20.33■□□□□ 0.85
Trim47Q8C0E3 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim47Q8C0E3 Gm44878-201ENSMUST00000205812 1295 ntBASIC20.33■□□□□ 0.85
Trim47Q8C0E3 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim47Q8C0E3 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Trim47Q8C0E3 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.33■□□□□ 0.84
Trim47Q8C0E3 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
Trim47Q8C0E3 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Gm7856-201ENSMUST00000117514 1493 ntBASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Gm2399-201ENSMUST00000104944 225 ntBASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Gm11249-201ENSMUST00000117071 859 ntBASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.32■□□□□ 0.84
Trim47Q8C0E3 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim47Q8C0E3 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Trim47Q8C0E3 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trim47Q8C0E3 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim47Q8C0E3 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC20.31■□□□□ 0.84
Trim47Q8C0E3 Gm15847-201ENSMUST00000121417 1065 ntBASIC20.31■□□□□ 0.84
Trim47Q8C0E3 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim47Q8C0E3 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim47Q8C0E3 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Trim47Q8C0E3 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim47Q8C0E3 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim47Q8C0E3 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim47Q8C0E3 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Trim47Q8C0E3 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim47Q8C0E3 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim47Q8C0E3 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim47Q8C0E3 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim47Q8C0E3 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim47Q8C0E3 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC20.3■□□□□ 0.84
Trim47Q8C0E3 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC20.3■□□□□ 0.84
Trim47Q8C0E3 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim47Q8C0E3 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim47Q8C0E3 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trim47Q8C0E3 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim47Q8C0E3 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC20.29■□□□□ 0.84
Trim47Q8C0E3 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim47Q8C0E3 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC20.29■□□□□ 0.84
Trim47Q8C0E3 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim47Q8C0E3 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim47Q8C0E3 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC20.29■□□□□ 0.84
Trim47Q8C0E3 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC20.28■□□□□ 0.84
Trim47Q8C0E3 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
Trim47Q8C0E3 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trim47Q8C0E3 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim47Q8C0E3 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trim47Q8C0E3 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Trim47Q8C0E3 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim47Q8C0E3 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim47Q8C0E3 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Trim47Q8C0E3 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim47Q8C0E3 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Trim47Q8C0E3 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim47Q8C0E3 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim47Q8C0E3 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Gm13168-201ENSMUST00000121771 632 ntBASIC20.27■□□□□ 0.84
Trim47Q8C0E3 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Wnt10b-205ENSMUST00000226846 1204 ntBASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim47Q8C0E3 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC20.27■□□□□ 0.83
Trim47Q8C0E3 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
Trim47Q8C0E3 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Trim47Q8C0E3 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim47Q8C0E3 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim47Q8C0E3 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Trim47Q8C0E3 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim47Q8C0E3 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim47Q8C0E3 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim47Q8C0E3 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms