Protein–RNA interactions for Protein: Q8BXJ2

Trerf1, Transcriptional-regulating factor 1, mousemouse

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trerf1Q8BXJ2 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trerf1Q8BXJ2 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trerf1Q8BXJ2 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trerf1Q8BXJ2 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trerf1Q8BXJ2 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Trerf1Q8BXJ2 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trerf1Q8BXJ2 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trerf1Q8BXJ2 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trerf1Q8BXJ2 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Trerf1Q8BXJ2 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trerf1Q8BXJ2 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trerf1Q8BXJ2 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trerf1Q8BXJ2 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trerf1Q8BXJ2 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trerf1Q8BXJ2 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
Trerf1Q8BXJ2 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Gm18688-201ENSMUST00000204695 1859 ntBASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Gm13534-201ENSMUST00000121169 513 ntBASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Gm7514-201ENSMUST00000209475 934 ntBASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trerf1Q8BXJ2 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trerf1Q8BXJ2 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trerf1Q8BXJ2 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trerf1Q8BXJ2 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC19.15■□□□□ 0.66
Trerf1Q8BXJ2 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Trerf1Q8BXJ2 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.15■□□□□ 0.66
Trerf1Q8BXJ2 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trerf1Q8BXJ2 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trerf1Q8BXJ2 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC19.15■□□□□ 0.66
Trerf1Q8BXJ2 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms