Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sh3rf1Q69ZI1 Gm43213-201ENSMUST00000151866 1790 ntBASIC18.53■□□□□ 0.56
Sh3rf1Q69ZI1 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Sh3rf1Q69ZI1 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sh3rf1Q69ZI1 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sh3rf1Q69ZI1 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sh3rf1Q69ZI1 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sh3rf1Q69ZI1 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sh3rf1Q69ZI1 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sh3rf1Q69ZI1 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Sh3rf1Q69ZI1 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Sh3rf1Q69ZI1 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Sh3rf1Q69ZI1 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Sh3rf1Q69ZI1 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.52■□□□□ 0.56
Sh3rf1Q69ZI1 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Sh3rf1Q69ZI1 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Sh3rf1Q69ZI1 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Sh3rf1Q69ZI1 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.52■□□□□ 0.56
Sh3rf1Q69ZI1 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Sh3rf1Q69ZI1 Ap3s1-204ENSMUST00000225520 957 ntBASIC18.52■□□□□ 0.56
Sh3rf1Q69ZI1 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.52■□□□□ 0.56
Sh3rf1Q69ZI1 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Sh3rf1Q69ZI1 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Sh3rf1Q69ZI1 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Sh3rf1Q69ZI1 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Sh3rf1Q69ZI1 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Sh3rf1Q69ZI1 Gm7856-201ENSMUST00000117514 1493 ntBASIC18.52■□□□□ 0.55
Sh3rf1Q69ZI1 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Sh3rf1Q69ZI1 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Sh3rf1Q69ZI1 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Sh3rf1Q69ZI1 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Sh3rf1Q69ZI1 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC18.51■□□□□ 0.55
Sh3rf1Q69ZI1 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Sh3rf1Q69ZI1 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.51■□□□□ 0.55
Sh3rf1Q69ZI1 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.51■□□□□ 0.55
Sh3rf1Q69ZI1 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Sh3rf1Q69ZI1 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Sh3rf1Q69ZI1 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Sh3rf1Q69ZI1 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Sh3rf1Q69ZI1 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Sh3rf1Q69ZI1 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Sh3rf1Q69ZI1 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Sh3rf1Q69ZI1 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Sh3rf1Q69ZI1 Gm7514-201ENSMUST00000209475 934 ntBASIC18.5■□□□□ 0.55
Sh3rf1Q69ZI1 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Sh3rf1Q69ZI1 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Sh3rf1Q69ZI1 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Sh3rf1Q69ZI1 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Sh3rf1Q69ZI1 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Sh3rf1Q69ZI1 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 Gm12933-201ENSMUST00000120203 872 ntBASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Sh3rf1Q69ZI1 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Sh3rf1Q69ZI1 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Sh3rf1Q69ZI1 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Sh3rf1Q69ZI1 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Sh3rf1Q69ZI1 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Sh3rf1Q69ZI1 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC18.48■□□□□ 0.55
Sh3rf1Q69ZI1 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.48■□□□□ 0.55
Sh3rf1Q69ZI1 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Sh3rf1Q69ZI1 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.48■□□□□ 0.55
Sh3rf1Q69ZI1 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Sh3rf1Q69ZI1 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Sh3rf1Q69ZI1 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Sh3rf1Q69ZI1 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Sh3rf1Q69ZI1 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Sh3rf1Q69ZI1 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Sh3rf1Q69ZI1 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Sh3rf1Q69ZI1 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC18.47■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 72.7 ms