Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC15.38■□□□□ 0.05
Col7a1Q63870 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col7a1Q63870 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col7a1Q63870 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col7a1Q63870 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Col7a1Q63870 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col7a1Q63870 Gm15043-201ENSMUST00000118843 1543 ntBASIC15.38■□□□□ 0.05
Col7a1Q63870 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col7a1Q63870 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC15.38■□□□□ 0.05
Col7a1Q63870 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC15.38■□□□□ 0.05
Col7a1Q63870 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC15.38■□□□□ 0.05
Col7a1Q63870 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Col7a1Q63870 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col7a1Q63870 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Col7a1Q63870 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col7a1Q63870 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col7a1Q63870 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col7a1Q63870 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC15.37■□□□□ 0.05
Col7a1Q63870 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Col7a1Q63870 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col7a1Q63870 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Col7a1Q63870 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Col7a1Q63870 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Col7a1Q63870 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col7a1Q63870 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col7a1Q63870 Mir6349-201ENSMUST00000184059 97 ntBASIC15.37■□□□□ 0.05
Col7a1Q63870 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col7a1Q63870 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col7a1Q63870 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col7a1Q63870 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC15.37■□□□□ 0.05
Col7a1Q63870 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Col7a1Q63870 AC159093.1-201ENSMUST00000227779 380 ntBASIC15.37■□□□□ 0.05
Col7a1Q63870 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col7a1Q63870 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC15.36■□□□□ 0.05
Col7a1Q63870 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col7a1Q63870 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC15.36■□□□□ 0.05
Col7a1Q63870 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Col7a1Q63870 Gm11950-201ENSMUST00000121615 838 ntBASIC15.36■□□□□ 0.05
Col7a1Q63870 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col7a1Q63870 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC15.36■□□□□ 0.05
Col7a1Q63870 Gm43347-201ENSMUST00000200226 580 ntBASIC15.36■□□□□ 0.05
Col7a1Q63870 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col7a1Q63870 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col7a1Q63870 Gm13884-201ENSMUST00000118103 829 ntBASIC15.36■□□□□ 0.05
Col7a1Q63870 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC15.36■□□□□ 0.05
Col7a1Q63870 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col7a1Q63870 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col7a1Q63870 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col7a1Q63870 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col7a1Q63870 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col7a1Q63870 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col7a1Q63870 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col7a1Q63870 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC15.35■□□□□ 0.05
Col7a1Q63870 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col7a1Q63870 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col7a1Q63870 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col7a1Q63870 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC15.34■□□□□ 0.05
Col7a1Q63870 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col7a1Q63870 Gm27389-201ENSMUST00000183622 195 ntBASIC15.34■□□□□ 0.05
Col7a1Q63870 Gm8784-201ENSMUST00000222096 1435 ntBASIC15.34■□□□□ 0.05
Col7a1Q63870 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC15.34■□□□□ 0.05
Col7a1Q63870 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col7a1Q63870 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col7a1Q63870 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col7a1Q63870 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col7a1Q63870 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col7a1Q63870 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col7a1Q63870 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col7a1Q63870 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col7a1Q63870 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC15.33■□□□□ 0.05
Col7a1Q63870 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col7a1Q63870 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col7a1Q63870 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col7a1Q63870 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col7a1Q63870 Gm11594-201ENSMUST00000122313 162 ntBASIC15.33■□□□□ 0.04
Col7a1Q63870 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col7a1Q63870 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col7a1Q63870 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Col7a1Q63870 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col7a1Q63870 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col7a1Q63870 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col7a1Q63870 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Col7a1Q63870 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col7a1Q63870 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col7a1Q63870 Gm7370-201ENSMUST00000219471 767 ntBASIC15.33■□□□□ 0.04
Col7a1Q63870 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col7a1Q63870 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Col7a1Q63870 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Col7a1Q63870 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col7a1Q63870 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col7a1Q63870 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col7a1Q63870 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col7a1Q63870 Spsb2-203ENSMUST00000112473 1322 ntBASIC15.32■□□□□ 0.04
Col7a1Q63870 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC15.32■□□□□ 0.04
Col7a1Q63870 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Col7a1Q63870 Gm43438-201ENSMUST00000198133 379 ntBASIC15.32■□□□□ 0.04
Col7a1Q63870 AC160393.1-201ENSMUST00000218378 1279 ntBASIC15.32■□□□□ 0.04
Col7a1Q63870 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col7a1Q63870 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col7a1Q63870 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC15.31■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms