Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Trim28Q62318 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC23.97■■□□□ 1.43
Trim28Q62318 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
Trim28Q62318 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Trim28Q62318 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Trim28Q62318 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC23.97■■□□□ 1.43
Trim28Q62318 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
Trim28Q62318 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC23.97■■□□□ 1.43
Trim28Q62318 Gm9484-201ENSMUST00000195892 1159 ntBASIC23.97■■□□□ 1.43
Trim28Q62318 AL672049.1-201ENSMUST00000197943 91 ntBASIC23.97■■□□□ 1.43
Trim28Q62318 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Trim28Q62318 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
Trim28Q62318 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Trim28Q62318 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Trim28Q62318 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
Trim28Q62318 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trim28Q62318 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trim28Q62318 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC23.96■■□□□ 1.43
Trim28Q62318 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Trim28Q62318 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trim28Q62318 Gm43183-201ENSMUST00000200632 547 ntBASIC23.96■■□□□ 1.43
Trim28Q62318 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trim28Q62318 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Trim28Q62318 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
Trim28Q62318 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Trim28Q62318 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC23.95■■□□□ 1.42
Trim28Q62318 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC23.95■■□□□ 1.42
Trim28Q62318 Mir6349-201ENSMUST00000184059 97 ntBASIC23.95■■□□□ 1.42
Trim28Q62318 Mir6982-201ENSMUST00000184354 68 ntBASIC23.95■■□□□ 1.42
Trim28Q62318 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC23.95■■□□□ 1.42
Trim28Q62318 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Trim28Q62318 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC23.94■■□□□ 1.42
Trim28Q62318 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
Trim28Q62318 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC23.94■■□□□ 1.42
Trim28Q62318 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trim28Q62318 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
Trim28Q62318 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trim28Q62318 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Trim28Q62318 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC23.94■■□□□ 1.42
Trim28Q62318 Mir2861-201ENSMUST00000175539 82 ntBASIC23.94■■□□□ 1.42
Trim28Q62318 Gm37292-201ENSMUST00000192062 758 ntBASIC23.94■■□□□ 1.42
Trim28Q62318 Gm42545-201ENSMUST00000202755 922 ntBASIC23.94■■□□□ 1.42
Trim28Q62318 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trim28Q62318 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC23.94■■□□□ 1.42
Trim28Q62318 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trim28Q62318 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC23.94■■□□□ 1.42
Trim28Q62318 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
Trim28Q62318 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Trim28Q62318 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trim28Q62318 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trim28Q62318 Gm42922-201ENSMUST00000195887 2078 ntBASIC23.93■■□□□ 1.42
Trim28Q62318 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trim28Q62318 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Trim28Q62318 Gm10654-201ENSMUST00000098653 1633 ntBASIC23.93■■□□□ 1.42
Trim28Q62318 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
Trim28Q62318 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Trim28Q62318 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
Trim28Q62318 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Trim28Q62318 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trim28Q62318 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trim28Q62318 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
Trim28Q62318 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC23.93■■□□□ 1.42
Trim28Q62318 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
Trim28Q62318 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC23.92■■□□□ 1.42
Trim28Q62318 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Trim28Q62318 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
Trim28Q62318 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
Trim28Q62318 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Trim28Q62318 Gm43231-201ENSMUST00000202960 2258 ntBASIC23.91■■□□□ 1.42
Trim28Q62318 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim28Q62318 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim28Q62318 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim28Q62318 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim28Q62318 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC23.91■■□□□ 1.42
Trim28Q62318 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC23.91■■□□□ 1.42
Trim28Q62318 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim28Q62318 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim28Q62318 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
Trim28Q62318 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Trim28Q62318 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim28Q62318 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim28Q62318 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
Trim28Q62318 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trim28Q62318 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trim28Q62318 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC23.9■■□□□ 1.42
Trim28Q62318 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
Trim28Q62318 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC23.9■■□□□ 1.42
Trim28Q62318 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC23.9■■□□□ 1.42
Trim28Q62318 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC23.9■■□□□ 1.42
Trim28Q62318 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trim28Q62318 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trim28Q62318 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Trim28Q62318 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.42
Trim28Q62318 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.42
Trim28Q62318 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Trim28Q62318 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC23.89■■□□□ 1.42
Trim28Q62318 Mir5122-201ENSMUST00000175004 89 ntBASIC23.89■■□□□ 1.41
Trim28Q62318 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC23.89■■□□□ 1.41
Trim28Q62318 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Trim28Q62318 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.41
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms