Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Msx3P70354 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msx3P70354 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Msx3P70354 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Msx3P70354 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC18.85■□□□□ 0.61
Msx3P70354 Gm5874-201ENSMUST00000096101 508 ntBASIC18.85■□□□□ 0.61
Msx3P70354 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Msx3P70354 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Msx3P70354 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msx3P70354 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx3P70354 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx3P70354 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
Msx3P70354 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx3P70354 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx3P70354 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx3P70354 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Msx3P70354 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx3P70354 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC18.84■□□□□ 0.61
Msx3P70354 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Msx3P70354 Gm6420-201ENSMUST00000193885 723 ntBASIC18.84■□□□□ 0.61
Msx3P70354 Gm7514-201ENSMUST00000209475 934 ntBASIC18.84■□□□□ 0.61
Msx3P70354 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Msx3P70354 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC18.84■□□□□ 0.61
Msx3P70354 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Msx3P70354 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx3P70354 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx3P70354 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx3P70354 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx3P70354 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx3P70354 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC18.84■□□□□ 0.61
Msx3P70354 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.84■□□□□ 0.61
Msx3P70354 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Msx3P70354 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Msx3P70354 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Msx3P70354 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Msx3P70354 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Msx3P70354 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Msx3P70354 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Msx3P70354 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Msx3P70354 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Msx3P70354 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Msx3P70354 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Msx3P70354 AC121961.1-201ENSMUST00000218594 1779 ntBASIC18.83■□□□□ 0.6
Msx3P70354 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Msx3P70354 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Msx3P70354 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Msx3P70354 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC18.82■□□□□ 0.6
Msx3P70354 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msx3P70354 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Msx3P70354 Gm38308-201ENSMUST00000194934 1809 ntBASIC18.82■□□□□ 0.6
Msx3P70354 Nespas-201ENSMUST00000143738 1083 ntBASIC18.82■□□□□ 0.6
Msx3P70354 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msx3P70354 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Msx3P70354 Gm42642-201ENSMUST00000200683 355 ntBASIC18.82■□□□□ 0.6
Msx3P70354 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Msx3P70354 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msx3P70354 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Msx3P70354 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msx3P70354 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Msx3P70354 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Msx3P70354 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Msx3P70354 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Msx3P70354 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msx3P70354 Grk6-206ENSMUST00000224995 2971 ntBASIC18.81■□□□□ 0.6
Msx3P70354 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
Msx3P70354 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.81■□□□□ 0.6
Msx3P70354 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msx3P70354 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC18.81■□□□□ 0.6
Msx3P70354 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Msx3P70354 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msx3P70354 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Msx3P70354 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msx3P70354 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msx3P70354 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msx3P70354 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Msx3P70354 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msx3P70354 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx3P70354 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Msx3P70354 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx3P70354 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx3P70354 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx3P70354 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Msx3P70354 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
Msx3P70354 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC18.8■□□□□ 0.6
Msx3P70354 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx3P70354 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx3P70354 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx3P70354 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Msx3P70354 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx3P70354 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Msx3P70354 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msx3P70354 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msx3P70354 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msx3P70354 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msx3P70354 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Msx3P70354 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Msx3P70354 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msx3P70354 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Msx3P70354 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msx3P70354 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 65.8 ms