Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC18.77■□□□□ 0.6
Sox1P53783 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Sox1P53783 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sox1P53783 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sox1P53783 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Sox1P53783 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sox1P53783 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
Sox1P53783 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Sox1P53783 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sox1P53783 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
Sox1P53783 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.77■□□□□ 0.59
Sox1P53783 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Sox1P53783 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC18.76■□□□□ 0.59
Sox1P53783 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Sox1P53783 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Sox1P53783 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Sox1P53783 Gm18115-201ENSMUST00000221209 621 ntBASIC18.76■□□□□ 0.59
Sox1P53783 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sox1P53783 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sox1P53783 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Sox1P53783 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sox1P53783 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sox1P53783 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.75■□□□□ 0.59
Sox1P53783 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC18.75■□□□□ 0.59
Sox1P53783 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC18.75■□□□□ 0.59
Sox1P53783 Gm5587-201ENSMUST00000206270 674 ntBASIC18.75■□□□□ 0.59
Sox1P53783 Gm12504-201ENSMUST00000120860 2231 ntBASIC18.75■□□□□ 0.59
Sox1P53783 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Sox1P53783 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sox1P53783 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC18.75■□□□□ 0.59
Sox1P53783 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Sox1P53783 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC18.75■□□□□ 0.59
Sox1P53783 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sox1P53783 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sox1P53783 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Sox1P53783 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sox1P53783 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sox1P53783 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sox1P53783 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sox1P53783 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sox1P53783 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sox1P53783 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sox1P53783 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sox1P53783 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Sox1P53783 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC18.74■□□□□ 0.59
Sox1P53783 AC164629.2-201ENSMUST00000217916 270 ntBASIC18.74■□□□□ 0.59
Sox1P53783 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sox1P53783 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sox1P53783 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Sox1P53783 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Sox1P53783 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Sox1P53783 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sox1P53783 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC18.73■□□□□ 0.59
Sox1P53783 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Sox1P53783 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Sox1P53783 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sox1P53783 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sox1P53783 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sox1P53783 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sox1P53783 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Sox1P53783 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sox1P53783 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Sox1P53783 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sox1P53783 Gm37935-201ENSMUST00000192012 982 ntBASIC18.72■□□□□ 0.59
Sox1P53783 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.72■□□□□ 0.59
Sox1P53783 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sox1P53783 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sox1P53783 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sox1P53783 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sox1P53783 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Sox1P53783 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC18.72■□□□□ 0.59
Sox1P53783 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
Sox1P53783 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sox1P53783 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sox1P53783 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sox1P53783 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sox1P53783 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sox1P53783 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sox1P53783 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sox1P53783 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sox1P53783 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sox1P53783 Gm4217-201ENSMUST00000182243 1002 ntBASIC18.71■□□□□ 0.59
Sox1P53783 Gm17808-201ENSMUST00000200859 894 ntBASIC18.71■□□□□ 0.59
Sox1P53783 AC166341.7-201ENSMUST00000221698 126 ntBASIC18.71■□□□□ 0.59
Sox1P53783 Gm32699-201ENSMUST00000221728 1988 ntBASIC18.71■□□□□ 0.59
Sox1P53783 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sox1P53783 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sox1P53783 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
Sox1P53783 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sox1P53783 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sox1P53783 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Sox1P53783 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sox1P53783 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Sox1P53783 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC18.7■□□□□ 0.58
Sox1P53783 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Sox1P53783 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC18.7■□□□□ 0.58
Sox1P53783 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Sox1P53783 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC18.7■□□□□ 0.58
Sox1P53783 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sox1P53783 Spr-ps1-201ENSMUST00000089584 605 ntBASIC18.7■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms