Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC20.95■□□□□ 0.94
Col2a1P28481 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col2a1P28481 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col2a1P28481 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col2a1P28481 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col2a1P28481 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Col2a1P28481 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC20.94■□□□□ 0.94
Col2a1P28481 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col2a1P28481 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col2a1P28481 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col2a1P28481 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col2a1P28481 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col2a1P28481 Gm38308-201ENSMUST00000194934 1809 ntBASIC20.94■□□□□ 0.94
Col2a1P28481 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col2a1P28481 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col2a1P28481 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col2a1P28481 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col2a1P28481 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col2a1P28481 Gm11643-201ENSMUST00000119578 864 ntBASIC20.94■□□□□ 0.94
Col2a1P28481 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC20.94■□□□□ 0.94
Col2a1P28481 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col2a1P28481 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC20.94■□□□□ 0.94
Col2a1P28481 Gm3375-201ENSMUST00000203929 796 ntBASIC20.94■□□□□ 0.94
Col2a1P28481 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col2a1P28481 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col2a1P28481 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col2a1P28481 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col2a1P28481 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col2a1P28481 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col2a1P28481 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col2a1P28481 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col2a1P28481 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col2a1P28481 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col2a1P28481 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col2a1P28481 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col2a1P28481 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col2a1P28481 AC158538.1-201ENSMUST00000225870 294 ntBASIC20.93■□□□□ 0.94
Col2a1P28481 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col2a1P28481 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC20.93■□□□□ 0.94
Col2a1P28481 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.92■□□□□ 0.94
Col2a1P28481 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col2a1P28481 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col2a1P28481 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col2a1P28481 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
Col2a1P28481 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col2a1P28481 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col2a1P28481 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col2a1P28481 Gm5784-201ENSMUST00000179344 2478 ntBASIC20.92■□□□□ 0.94
Col2a1P28481 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col2a1P28481 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col2a1P28481 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col2a1P28481 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col2a1P28481 Gm13836-201ENSMUST00000121159 501 ntBASIC20.91■□□□□ 0.94
Col2a1P28481 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Col2a1P28481 Arhgef4-208ENSMUST00000211073 171 ntBASIC20.91■□□□□ 0.94
Col2a1P28481 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Col2a1P28481 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col2a1P28481 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col2a1P28481 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC20.9■□□□□ 0.94
Col2a1P28481 Gm20472-201ENSMUST00000174403 1240 ntBASIC20.9■□□□□ 0.94
Col2a1P28481 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC20.9■□□□□ 0.94
Col2a1P28481 Timm23-208ENSMUST00000226683 750 ntBASIC20.9■□□□□ 0.94
Col2a1P28481 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Col2a1P28481 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Col2a1P28481 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC20.9■□□□□ 0.94
Col2a1P28481 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col2a1P28481 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
Col2a1P28481 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Col2a1P28481 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col2a1P28481 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Col2a1P28481 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col2a1P28481 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col2a1P28481 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC20.89■□□□□ 0.93
Col2a1P28481 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col2a1P28481 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
Col2a1P28481 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col2a1P28481 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Col2a1P28481 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Col2a1P28481 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Col2a1P28481 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col2a1P28481 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col2a1P28481 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
Col2a1P28481 Gm7712-202ENSMUST00000222331 1510 ntBASIC20.88■□□□□ 0.93
Col2a1P28481 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col2a1P28481 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC20.88■□□□□ 0.93
Col2a1P28481 Gm5417-201ENSMUST00000079706 384 ntBASIC20.88■□□□□ 0.93
Col2a1P28481 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col2a1P28481 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col2a1P28481 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col2a1P28481 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col2a1P28481 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.87■□□□□ 0.93
Col2a1P28481 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col2a1P28481 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col2a1P28481 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col2a1P28481 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col2a1P28481 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
Col2a1P28481 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col2a1P28481 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col2a1P28481 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC20.87■□□□□ 0.93
Col2a1P28481 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms