Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Cdx1P18111 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Cdx1P18111 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdx1P18111 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdx1P18111 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdx1P18111 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdx1P18111 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdx1P18111 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdx1P18111 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Cdx1P18111 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdx1P18111 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Cdx1P18111 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Cdx1P18111 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC14.74□□□□□ -0.05
Cdx1P18111 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdx1P18111 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdx1P18111 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Cdx1P18111 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdx1P18111 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdx1P18111 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdx1P18111 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdx1P18111 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Cdx1P18111 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC14.73□□□□□ -0.05
Cdx1P18111 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdx1P18111 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdx1P18111 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Cdx1P18111 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Cdx1P18111 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC14.73□□□□□ -0.05
Cdx1P18111 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC14.73□□□□□ -0.05
Cdx1P18111 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdx1P18111 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Cdx1P18111 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdx1P18111 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
Cdx1P18111 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdx1P18111 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdx1P18111 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC14.73□□□□□ -0.05
Cdx1P18111 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Cdx1P18111 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC14.72□□□□□ -0.05
Cdx1P18111 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Cdx1P18111 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Cdx1P18111 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 AC124603.1-201ENSMUST00000223843 308 ntBASIC14.72□□□□□ -0.05
Cdx1P18111 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Cdx1P18111 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Cdx1P18111 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC14.72□□□□□ -0.05
Cdx1P18111 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdx1P18111 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC14.72□□□□□ -0.05
Cdx1P18111 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx1P18111 Gm15853-202ENSMUST00000195518 2041 ntBASIC14.71□□□□□ -0.05
Cdx1P18111 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx1P18111 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx1P18111 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx1P18111 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx1P18111 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx1P18111 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Cdx1P18111 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC14.71□□□□□ -0.06
Cdx1P18111 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Cdx1P18111 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
Cdx1P18111 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx1P18111 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx1P18111 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC14.7□□□□□ -0.06
Cdx1P18111 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx1P18111 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx1P18111 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
Cdx1P18111 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx1P18111 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx1P18111 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC14.7□□□□□ -0.06
Cdx1P18111 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Cdx1P18111 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC14.7□□□□□ -0.06
Cdx1P18111 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx1P18111 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC14.7□□□□□ -0.06
Cdx1P18111 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx1P18111 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Cdx1P18111 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC14.7□□□□□ -0.06
Cdx1P18111 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx1P18111 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx1P18111 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx1P18111 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC14.7□□□□□ -0.06
Cdx1P18111 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms