Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Msx1P13297 Rncr4-201ENSMUST00000194541 2234 ntBASIC17.35■□□□□ 0.37
Msx1P13297 Gm43231-201ENSMUST00000202960 2258 ntBASIC17.35■□□□□ 0.37
Msx1P13297 Gm12896-201ENSMUST00000118430 226 ntBASIC17.35■□□□□ 0.37
Msx1P13297 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC17.35■□□□□ 0.37
Msx1P13297 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Msx1P13297 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Msx1P13297 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Msx1P13297 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Msx1P13297 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Msx1P13297 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Msx1P13297 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Msx1P13297 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Msx1P13297 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Msx1P13297 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Msx1P13297 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Msx1P13297 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC17.35■□□□□ 0.37
Msx1P13297 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Msx1P13297 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Msx1P13297 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Msx1P13297 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Msx1P13297 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Msx1P13297 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC17.34■□□□□ 0.37
Msx1P13297 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Msx1P13297 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Msx1P13297 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Msx1P13297 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Msx1P13297 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Msx1P13297 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Msx1P13297 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Msx1P13297 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Msx1P13297 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Msx1P13297 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Msx1P13297 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Msx1P13297 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Msx1P13297 AC131586.2-201ENSMUST00000228370 1512 ntBASIC17.33■□□□□ 0.37
Msx1P13297 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Msx1P13297 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Msx1P13297 Gm5643-201ENSMUST00000117081 966 ntBASIC17.33■□□□□ 0.36
Msx1P13297 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Msx1P13297 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Msx1P13297 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Msx1P13297 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Msx1P13297 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Msx1P13297 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Msx1P13297 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Msx1P13297 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC17.33■□□□□ 0.36
Msx1P13297 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Msx1P13297 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
Msx1P13297 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Msx1P13297 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.32■□□□□ 0.36
Msx1P13297 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Msx1P13297 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Msx1P13297 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Msx1P13297 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Msx1P13297 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Msx1P13297 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.32■□□□□ 0.36
Msx1P13297 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC17.32■□□□□ 0.36
Msx1P13297 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Msx1P13297 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC17.32■□□□□ 0.36
Msx1P13297 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Msx1P13297 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Msx1P13297 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Msx1P13297 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Msx1P13297 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Msx1P13297 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Msx1P13297 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Msx1P13297 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Msx1P13297 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Msx1P13297 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Msx1P13297 Gm29179-208ENSMUST00000190450 1137 ntTSL 5 BASIC17.31■□□□□ 0.36
Msx1P13297 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC17.31■□□□□ 0.36
Msx1P13297 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.31■□□□□ 0.36
Msx1P13297 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC17.31■□□□□ 0.36
Msx1P13297 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Msx1P13297 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC17.31■□□□□ 0.36
Msx1P13297 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Msx1P13297 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
Msx1P13297 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Msx1P13297 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Msx1P13297 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Msx1P13297 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Msx1P13297 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Msx1P13297 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Msx1P13297 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC17.31■□□□□ 0.36
Msx1P13297 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Msx1P13297 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Msx1P13297 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msx1P13297 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Msx1P13297 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Msx1P13297 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Msx1P13297 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msx1P13297 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC17.3■□□□□ 0.36
Msx1P13297 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Msx1P13297 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC17.3■□□□□ 0.36
Msx1P13297 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC17.3■□□□□ 0.36
Msx1P13297 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Msx1P13297 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.3■□□□□ 0.36
Msx1P13297 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msx1P13297 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms